RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	PDIA2	Q13087	525 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	AIMP2	Q13155	320 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DSG2	Q14126	1118 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NDUFA9	Q16795	377 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RBM20	Q5T481	1227 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	VWA5B1	Q5TIE3	1220 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	HECTD2	Q5U5R9	776 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PRAMEF13	Q5VWM6	474 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DUPD1	Q68J44	220 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TRMT10B	Q6PF06	316 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	AGTRAP	Q6RW13	159 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	COX15	Q7KZN9	410 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ZNF572	Q7Z3I7	529 aa	Predicted RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PPP1R32	Q7Z5V6	425 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	C17orf64	Q86WR6	236 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OR4N4	Q8N0Y3	316 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CSNK1A1L	Q8N752	337 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FBXO36	Q8NEA4	188 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	LINGO1	Q96FE5	620 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CFAP36	Q96G28	342 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	VPS39	Q96JC1	886 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CABS1	Q96KC9	395 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SPSB2	Q99619	263 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	WDR83	Q9BRX9	315 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	HAUS8	Q9BT25	410 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SGPP1	Q9BX95	441 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	POPDC3	Q9HBV1	291 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ATP13A2	Q9NQ11	1180 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	P4HTM	Q9NXG6	502 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NBAS	A2RRP1	2371 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RP1L1	Q8IWN7	2480 aa	Predicted RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		K7EM74	188 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TBPL1	P62380	186 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TSTA3	Q13630	321 aa	Predicted RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MYBPC3	Q14896	1274 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SLC9A5	Q14940	896 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FAM69B	Q5VUD6	431 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CAPN13	Q6MZZ7	669 aa	Predicted RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	LCTL	Q6UWM7	567 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	IGFL3	Q6UXB1	125 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ZC3HC1	Q86WB0	502 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NKAP	Q8N5F7	415 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	GPATCH11	Q8N954	259 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FDCSP	Q8NFU4	85 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PYROXD1	Q8WU10	500 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TM9SF4	Q92544	642 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CDKL2	Q92772	493 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	COL26A1	Q96A83	441 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	C10orf90	Q96M02	699 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SARG	Q9BW04	601 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TRIM31	Q9BZY9	425 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TGIF2	Q9GZN2	237 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RAB17	Q9H0T7	212 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	C14orf105	Q9NVL8	296 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SNX24	Q9Y343	169 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	UTP11	Q9Y3A2	253 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	BSN	Q9UPA5	3926 aa		12	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	LRRK2	Q5S007	2527 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		A0A1W2PQ72	361 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PDGFA	P04085	211 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	F7	P08709	466 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ZNF37A	P17032	561 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FBL	P22087	321 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	GRK3	P35626	688 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SLC26A3	P40879	764 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OR1D4	P47884	311 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CD97	P48960	835 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	YBX1	P67809	324 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CDKL1	Q00532	357 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CHAF1B	Q13112	559 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ADCK2	Q7Z695	626 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	STRA8	Q7Z7C7	330 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ZBED8	Q8IZ13	594 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	GALNT16	Q8N428	558 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ARHGEF39	Q8N4T4	335 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PPFIBP2	Q8ND30	876 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ABHD11	Q8NFV4	315 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OR56A3	Q8NH54	315 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	STT3B	Q8TCJ2	826 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MIEF2	Q96C03	454 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FBXL8	Q96CD0	374 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PWWP2A	Q96N64	755 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DRC3	Q9H069	523 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RHOJ	Q9H4E5	214 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ARL15	Q9NXU5	204 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CDC23	Q9UJX2	597 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ADAMTS6	Q9UKP5	1117 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RUVBL1	Q9Y265	456 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MAP4K5	Q9Y4K4	846 aa		11.99	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MDC1	Q14676	2089 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CCDC88C	Q9P219	2028 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NUP210L	Q5VU65	1888 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		H0YIG0	161 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		H7BY64	318 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SOCS6	O14544	535 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	HAT1	O14929	419 aa		11.98	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NRP2	O60462	931 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms