RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 LRRTM2O43300 516 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 KLHL41O60662 606 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 AVILO75366 819 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 VAPBO95292 243 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 GAS8O95995 478 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 HPP00738 406 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 STSP08842 583 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PRR35P0CG20 571 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PIM1P11309 404 aaPredicted RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 EDN3P14138 238 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TPSB2P20231 275 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ATP5DP30049 168 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 FMO4P31512 558 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 SLC26A3P40879 764 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 NPY2RP49146 381 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CLCN7P51798 805 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 EMP3P54852 163 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ADARP55265 1226 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 EIF3BP55884 814 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 SRSF11Q05519 484 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 MFAP5Q13361 173 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CRYMQ14894 314 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PCOLCEQ15113 449 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TMED2Q15363 201 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TPSAB1Q15661 275 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 RBBP7Q16576 425 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 SYT16Q17RD7 645 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ERCC6LQ2NKX8 1250 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 HKDC1Q2TB90 917 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 KLHL38Q2WGJ6 581 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 FAM214AQ32MH5 1076 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 AARS2Q5JTZ9 985 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 ANKRD22Q5VYY1 191 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 B3GNTL1Q67FW5 361 aaPredicted RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 PTRHD1Q6GMV3 140 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 PRMT9Q6P2P2 845 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ZNF549Q6P9A3 640 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 LRRC8BQ6P9F7 803 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 SUSD1Q6UWL2 747 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ISLR2Q6UXK2 745 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CYHR1Q6ZMK1 362 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 LINC00696Q6ZRV3 163 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 OTOAQ7RTW8 1153 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CAND1Q86VP6 1230 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 LRRC6Q86X45 466 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PRSS58Q8IYP2 241 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PPFIBP2Q8ND30 876 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 OR9A1PQ8NGU1 263 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PANX3Q96QZ0 392 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 LMF1Q96S06 567 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PKP4Q99569 1192 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ZFYVE21Q9BQ24 234 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ACAT2Q9BWD1 397 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TSSK1BQ9BXA7 367 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 RAB11FIP5Q9BXF6 653 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 IL22Q9GZX6 179 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ZNF160Q9HCG1 818 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 PLA2G3Q9NZ20 509 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 SPATA7Q9P0W8 599 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TSR3Q9UJK0 312 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 ANAPC5Q9UJX4 755 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 C3orf18Q9UK00 162 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 NXT1Q9UKK6 140 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 GUCA1BQ9UMX6 200 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 SOX13Q9UN79 622 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CRYL1Q9Y2S2 319 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 MRPS2Q9Y399 296 aaKnown RBP6.39□□□□□ -1.39
VPS53-213ENST00000572334 ZNF407Q9C0G0 2248 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 CCDC168Q8NDH2 2452 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ZFHX3Q15911 3703 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 ADGRG4Q8IZF6 3080 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 MED13LQ71F56 2210 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 TACC2O95359 2948 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 IGHV1-45A0A0A0MS14 117 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 IDSB3KWA1 339 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 E7ENX8 843 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 F8W8V4 182 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 PCDH17O14917 1159 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 KPNA5O15131 536 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 ZG16O60844 167 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 NDUFS3O75489 264 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 EIF2S1P05198 315 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 ITGAMP11215 1152 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 PKMP14618 531 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 ACPPP15309 386 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 EZRP15311 586 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 FBLP22087 321 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 MST1P26927 711 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 PPARGP37231 505 aaPredicted RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 CCNFP41002 786 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 MAGEA6P43360 314 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CARSP49589 748 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 TNFSF10P50591 281 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 BASP1P80723 227 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 TIAL1Q01085 375 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS53-213ENST00000572334 TAP2Q03519 686 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 EEF1A2Q05639 463 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 PRDX1Q06830 199 aaKnown RBP6.38□□□□□ -1.39
VPS53-213ENST00000572334 IFFO1Q0D2I5 559 aa6.38□□□□□ -1.39
VPS53-213ENST00000572334 CDC16Q13042 620 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms