RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CDH3P22223 829 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 CCND1P24385 295 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 CASP2P42575 452 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SERPINB4P48594 390 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SEPHS1P49903 392 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 CDH13P55290 713 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 DNAJB13P59910 316 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 HERVK_113P63132 956 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 ABATP80404 500 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 REEP5Q00765 189 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 MEF2AQ02078 507 aaPredicted RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 RELAQ04206 551 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 CDC16Q13042 620 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 PRKAA1Q13131 559 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SF1Q15637 639 aaKnown RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 DEFB110Q30KQ9 67 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 FRMPD2BQ6IN97 320 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 METTL2BQ6P1Q9 378 aaKnown RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 NXPE4Q6UWF7 544 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 DGLUCYQ7Z3D6 616 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 KMT5CQ86Y97 462 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 OR4N4Q8N0Y3 316 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 ANKRD53Q8N9V6 530 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 MDM1Q8TC05 714 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SLC5A11Q8WWX8 675 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SLC22A18Q96BI1 424 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 ZNF501Q96CX3 271 aaPredicted RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 PKNOX2Q96KN3 472 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 PRAP1Q96NZ9 151 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 OR2A5Q96R48 311 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 ERVK-6Q9BXR3 956 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 SPRY4Q9C004 299 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 PCBD2Q9H0N5 130 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 APMAPQ9HDC9 416 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 MRPS30Q9NP92 439 aaKnown RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 DNAJC11Q9NVH1 559 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 GEMIN8Q9NWZ8 242 aaKnown RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 ZNF490Q9ULM2 529 aaPredicted RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 TMCO1Q9UM00 188 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 LAMA5O15230 3695 aa8.91□□□□□ -0.98
VPS35-211ENST00000569950 DSPP15924 2871 aaKnown RBP8.91□□□□□ -0.98
VPS35-211ENST00000569950 ZNF839A8K0R7 811 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 C4orf51C9J302 202 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 AGRPO00253 132 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TM9SF1O15321 606 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ATP8B1O43520 1251 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 CCNT2O60583 730 aaKnown RBP8.9□□□□□ -0.98
VPS35-211ENST00000569950 SMIM24O75264 130 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 CAPNS1P04632 268 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 MYL2P10916 166 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 CMPK1P30085 196 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 BCL6P41182 706 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 HSD11B2P80365 405 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 MC2RQ01718 297 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 HYAL2Q12891 473 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 GTF2H2Q13888 395 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 DOC2AQ14183 400 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 GPR19Q15760 415 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TBCCQ15814 346 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 PDK4Q16654 411 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 PHF19Q5T6S3 580 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 PRAMEF17Q5VTA0 474 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ATG9BQ674R7 924 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 GTF2H2CQ6P1K8 395 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 LETMD1Q6P1Q0 360 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ZCCHC23Q6ZST2 131 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 FRMD7Q6ZUT3 714 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 SHISA5Q8N114 240 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TEX9Q8N6V9 391 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 L3MBTL4Q8NA19 623 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 OR1L3Q8NH93 324 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ZUFSPQ96AP4 578 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TM4SF19Q96DZ7 209 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TMEM74Q96NL1 305 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 DEPDC7Q96QD5 511 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 HAUS8Q9BT25 410 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 C20orf27Q9GZN8 174 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 EHD1Q9H4M9 534 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ZNF395Q9H8N7 513 aaPredicted RBP8.9□□□□□ -0.98
VPS35-211ENST00000569950 CNOT10Q9H9A5 744 aaKnown RBP8.9□□□□□ -0.98
VPS35-211ENST00000569950 PELI2Q9HAT8 420 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 MLXIPLQ9NP71 852 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ASCL3Q9NQ33 180 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ABCF3Q9NUQ8 709 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 TMEM184CQ9NVA4 438 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 GPRC5BQ9NZH0 403 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 ANKMY1Q9P2S6 941 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 OPTCQ9UBM4 332 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 USP24Q9UPU5 2620 aa8.9□□□□□ -0.98
VPS35-211ENST00000569950 LOC400499M0QZD8 3231 aa8.9□□□□□ -0.99
VPS35-211ENST00000569950 ITPR1Q14643 2758 aa8.9□□□□□ -0.99
VPS35-211ENST00000569950 MAP1BP46821 2468 aaKnown RBP8.89□□□□□ -0.99
VPS35-211ENST00000569950 CCDC187A0A096LP49 1063 aa8.89□□□□□ -0.99
VPS35-211ENST00000569950 MED19A0JLT2 244 aaPredicted RBP8.89□□□□□ -0.99
VPS35-211ENST00000569950 FEZF1A0PJY2 475 aa8.89□□□□□ -0.99
VPS35-211ENST00000569950 HMGB1P1B2RPK0 211 aaPredicted RBP8.89□□□□□ -0.99
VPS35-211ENST00000569950 B4E171 279 aa8.89□□□□□ -0.99
VPS35-211ENST00000569950 C9orf172C9J069 976 aa8.89□□□□□ -0.99
VPS35-211ENST00000569950 ZW10O43264 779 aa8.89□□□□□ -0.99
VPS35-211ENST00000569950 RASSF9O75901 435 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms