RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ELP4Q96EB1 424 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PGAP3Q96FM1 320 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 DUS3LQ96G46 650 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 MRPL48Q96GC5 212 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 FEM1CQ96JP0 617 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PPP1R36Q96LQ0 422 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TGS1Q96RS0 853 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZNF347Q96SE7 839 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ACO2Q99798 780 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 PRMT1Q99873 361 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 RBM4BQ9BQ04 359 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 FAM213AQ9BRX8 229 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BTBD10Q9BSF8 475 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 COPS4Q9BT78 406 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC25A23Q9BV35 468 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TMEM109Q9BVC6 243 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 RBM4Q9BWF3 364 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CHID1Q9BWS9 393 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TMEM120AQ9BXJ8 343 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC2A11Q9BYW1 496 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 OPN3Q9H1Y3 402 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 OR51M1Q9H341 326 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SAV1Q9H4B6 383 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 RPF2Q9H7B2 306 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 COG4Q9H9E3 785 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 EPB41L5Q9HCM4 733 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PDE7BQ9NP56 450 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 HMG20AQ9NP66 347 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GSN-AS1Q9NRJ2 163 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PCDHB16Q9NRJ7 776 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 C1orf112Q9NSG2 853 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PLCXD1Q9NUJ7 323 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 EXD2Q9NVH0 621 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SMOXQ9NWM0 555 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TMOD2Q9NZR1 351 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ABCD2Q9UBJ2 740 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 POLLQ9UGP5 575 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 IL19Q9UHD0 177 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GLS2Q9UI32 602 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BTNL2Q9UIR0 455 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 HAO1Q9UJM8 370 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MID2Q9UJV3 735 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CDH9Q9ULB4 789 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ACSL5Q9ULC5 683 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CHKBQ9Y259 395 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC22A14Q9Y267 594 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TNFSF13BQ9Y275 285 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MFHAS1Q9Y4C4 1052 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 AP4S1Q9Y587 144 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PCDHGB5Q9Y5G0 923 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PHRF1Q9P1Y6 1649 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 DCCP43146 1447 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MST1RQ04912 1400 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PTPRFP10586 1907 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CHD4Q14839 1912 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ABCC4O15439 1325 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SPATA31A3Q5VYP0 1347 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MED1Q15648 1581 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 BICRAQ9NZM4 1560 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SIPA1L1O43166 1804 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ARHGEF10O15013 1369 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 NID2Q14112 1375 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZCCHC11Q5TAX3 1644 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 TDRD9Q8NDG6 1382 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 LOC100506127A0A0U1RQW1 187 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 A0A1W2PPL8 197 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MFSD2BA6NFX1 497 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LINC00473A8K010 186 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 IQCF5A8MTL0 148 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 A8MUA0 341 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 FOXO6A8MYZ6 492 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 HACD1B0YJ81 288 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KCNJ18B7U540 433 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CLDN25C9JDP6 229 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 H0YIN7 160 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 H3BMQ9 156 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 K7ERQ8 282 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 EEF2KO00418 725 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 SH2B2O14492 632 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 DCLK1O15075 740 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TOX3O15405 576 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 PROM1O43490 865 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 FRS3O43559 492 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CHMP2AO43633 222 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PRPSAP2O60256 369 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CACNG3O60359 315 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 HUS1O60921 280 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 NOL3O60936 208 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZNF780AO75290 641 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 TRIM3O75382 744 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CRCPO75575 148 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 RFPL2O75678 378 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CLPXO76031 633 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 RHOBTB1O94844 696 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GCNT3O95395 438 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TTLL1O95922 423 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PTTG1O95997 202 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCNE2O96020 404 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 C1RP00736 705 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 IGLV2-14P01704 120 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms