RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 HKDC1Q2TB90 917 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 PTRH1Q86Y79 214 aaKnown RBP19.57■□□□□ 0.72
VTI1B-205ENST00000555543 CSNK1A1LQ8N752 337 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 NOA1Q8NC60 698 aaKnown RBP19.57■□□□□ 0.72
VTI1B-205ENST00000555543 OR2Y1Q8NGV0 311 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 FKBP10Q96AY3 582 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 ALKBH8Q96BT7 664 aaKnown RBP19.57■□□□□ 0.72
VTI1B-205ENST00000555543 PRAP1Q96NZ9 151 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 CAB39LQ9H9S4 337 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 ZDHHC18Q9NUE0 388 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 ARL15Q9NXU5 204 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 CTSFQ9UBX1 484 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 TP53TG5Q9Y2B4 290 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 MAU2Q9Y6X3 613 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 TENM4Q6N022 2769 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 MED13Q9UHV7 2174 aa19.57■□□□□ 0.72
VTI1B-205ENST00000555543 NPEPPSL1A6NEC2 478 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 P2RX6O15547 441 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 HIST1H2AGP0C0S8 130 aaPredicted RBP19.56■□□□□ 0.72
VTI1B-205ENST00000555543 HIST1H2ADP20671 130 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 AP1S2P56377 157 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 SNRPNP63162 240 aaKnown RBP19.56■□□□□ 0.72
VTI1B-205ENST00000555543 FAM214AQ32MH5 1076 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 CYS1Q717R9 158 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 OVCH1Q7RTY7 1134 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 MRGPREQ86SM8 312 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 NKAPQ8N5F7 415 aaKnown RBP19.56■□□□□ 0.72
VTI1B-205ENST00000555543 CDKL2Q92772 493 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 PYCR2Q96C36 320 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 HIST1H2AHQ96KK5 128 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 RBBP8Q99708 897 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 HIST1H2AJQ99878 128 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 H2AFJQ9BTM1 129 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 ING2Q9H160 280 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 LRRC4CQ9HCJ2 640 aa19.56■□□□□ 0.72
VTI1B-205ENST00000555543 UTP6Q9NYH9 597 aaKnown RBP19.56■□□□□ 0.72
VTI1B-205ENST00000555543 RUVBL1Q9Y265 456 aaKnown RBP19.56■□□□□ 0.72
VTI1B-205ENST00000555543 MKRN2OSH3BPM6 223 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 WISP3O95389 354 aaPredicted RBP19.55■□□□□ 0.72
VTI1B-205ENST00000555543 GUCA1CO95843 209 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 STATHP02808 62 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 PDGFAP04085 211 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 ENO2P09104 434 aaPredicted RBP19.55■□□□□ 0.72
VTI1B-205ENST00000555543 GSTA2P09210 222 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 GUCY2DQ02846 1103 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 RELAQ04206 551 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 NKG7Q16617 165 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 KBTBD12Q3ZCT8 623 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 LACTB2Q53H82 288 aaPredicted RBP19.55■□□□□ 0.72
VTI1B-205ENST00000555543 PRICKLE2Q7Z3G6 844 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 RAB43Q86YS6 212 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 ARHGEF39Q8N4T4 335 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 MMGT1Q8N4V1 131 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 OR56A3Q8NH54 315 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 FBXL8Q96CD0 374 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 CABS1Q96KC9 395 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 OR4K3Q96R72 315 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 SPSB2Q99619 263 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 GPR22Q99680 433 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 CPNE1Q99829 537 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 PCBD2Q9H0N5 130 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 SLC26A1Q9H2B4 701 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 GPAMQ9HCL2 828 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 TMEM184CQ9NVA4 438 aa19.55■□□□□ 0.72
VTI1B-205ENST00000555543 SLC28A2O43868 658 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 FAM155BO75949 473 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 CDH1P12830 882 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 NPPBP16860 134 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 GP5P40197 560 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 CSNK1G2P78368 415 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 POU4F1Q01851 419 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 SSPNQ14714 243 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 EFTUD2Q15029 972 aaKnown RBP eCLIP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 MUM1Q2TAK8 710 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 UBAP2Q5T6F2 1119 aaKnown RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 LCTLQ6UWM7 567 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 VN1R4Q7Z5H5 301 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 PPP1R32Q7Z5V6 425 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 C17orf64Q86WR6 236 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 CTAGE3PQ8IX95 158 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 RERGQ96A58 199 aaPredicted RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 TRIM54Q9BYV2 358 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 UNKQ9C0B0 810 aaKnown RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 POPDC3Q9HBV1 291 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 ACSS2Q9NR19 701 aa19.54■□□□□ 0.72
VTI1B-205ENST00000555543 DMGDHQ9UI17 866 aaKnown RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 NOVA2Q9UNW9 492 aaKnown RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 HEMK1Q9Y5R4 338 aaPredicted RBP19.54■□□□□ 0.72
VTI1B-205ENST00000555543 PABPN1LA6NDY0 278 aaKnown RBP19.53■□□□□ 0.72
VTI1B-205ENST00000555543 PHGDHO43175 533 aaKnown RBP19.53■□□□□ 0.72
VTI1B-205ENST00000555543 SUV39H1O43463 412 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 ALBP02768 609 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 CD63P08962 238 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 CCND1P24385 295 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 HRH2P25021 359 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 CCL11P51671 97 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 EMP3P54852 163 aa19.53■□□□□ 0.72
VTI1B-205ENST00000555543 TSNQ15631 228 aaKnown RBP19.53■□□□□ 0.72
VTI1B-205ENST00000555543 CAPN13Q6MZZ7 669 aaPredicted RBP19.53■□□□□ 0.72
VTI1B-205ENST00000555543 TCTN3Q6NUS6 607 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms