RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CCDC59Q9P031 241 aaKnown RBP17.01■□□□□ 0.31
SYNE3-202ENST00000553340 TRBV5-4A0A0C4DH59 114 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 FAM47E-STBD1D6RA91 191 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 HAT1O14929 419 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 DSCR3O14972 297 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CA12O43570 354 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 IGHA2P01877 340 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 ALOX12P18054 663 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SRSF11Q05519 484 aaKnown RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 BOP1Q14137 746 aaKnown RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 CDKL4Q5MAI5 379 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 MLIPQ5VWP3 458 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 NOXRED1Q6NXP6 359 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 LRRC70Q7Z2Q7 622 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 RTN4RL1Q86UN2 441 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 CCDC103Q8IW40 242 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CSGALNACT1Q8TDX6 532 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 KCNC2Q96PR1 638 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 DPH2Q9BQC3 489 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 ABCG8Q9H221 673 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 RUBCNLQ9H714 662 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CWH43Q9H720 699 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 FCF1Q9Y324 198 aaKnown RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 PCDHGB3Q9Y5G1 929 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 LOC100506127A0A0U1RQW1 187 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CLCA1A8K7I4 914 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CDK1P06493 297 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SPNP16150 400 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 AMD1P17707 334 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 VEZF1Q14119 521 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 FBXO43Q4G163 708 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SLC24A5Q71RS6 500 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 HEATR4Q86WZ0 1026 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 METTL4Q8N3J2 472 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 DNAJC22Q8N4W6 341 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 PAF1Q8N7H5 531 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF675Q8TD23 568 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CAPSLQ8WWF8 208 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 PLD4Q96BZ4 506 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 GPR62Q9BZJ7 368 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SPASTQ9UBP0 616 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 NUP214P35658 2090 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 KCNE1BA0A087WTH5 132 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 GLYATL1P3A0A0U1RQE8 302 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 COL6A1P12109 1028 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 ACPPP15309 386 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 MAGP20916 626 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 GGT2P36268 569 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SLC19A1P41440 591 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CASP3P42574 277 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 DEFA1P59665 94 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 DEFA3P59666 94 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 ADGRF1Q5T601 910 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CCBE1Q6UXH8 406 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 RSPO2Q6UXX9 243 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 Q6ZPB1 254 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 ZSWIM9Q86XI8 627 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SYT12Q8IV01 421 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 ZNF486Q96H40 463 aaPredicted RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 AMBNQ9NP70 447 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 PRDM8Q9NQV8 689 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 KCTD5Q9NXV2 234 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 SPATA7Q9P0W8 599 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 AFF4Q9UHB7 1163 aaKnown RBP17■□□□□ 0.31
SYNE3-202ENST00000553340 RAPGEFL1Q9UHV5 662 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 PEX16Q9Y5Y5 336 aa17■□□□□ 0.31
SYNE3-202ENST00000553340 CPSF4O95639 269 aaKnown RBP16.99■□□□□ 0.31
SYNE3-202ENST00000553340 CBSLP0DN79 551 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 CBSP35520 551 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 NKX2-5P52952 324 aaPredicted RBP16.99■□□□□ 0.31
SYNE3-202ENST00000553340 IQCCQ4KMZ1 466 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 ADGRG2Q8IZP9 1017 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 CPA6Q8N4T0 437 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 GGHQ92820 318 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 C7orf34Q96L11 122 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 TTLL2Q9BWV7 592 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 EBPLQ9BY08 206 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 GKN1Q9NS71 199 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 PIKFYVEQ9Y2I7 2098 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 NPIPB8E9PQR5 432 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 STC2O76061 302 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 ATF6P18850 670 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 RRM2P31350 389 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 NR4A2P43354 598 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 SMARCB1Q12824 385 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 CHRNA6Q15825 494 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 CHAC2Q8WUX2 184 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 ATL1Q8WXF7 558 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 SOCS4Q8WXH5 440 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 MIR1-1HGQ9H1L0 117 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 FKBP14Q9NWM8 211 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 ADPRHL2Q9NX46 363 aa16.99■□□□□ 0.31
SYNE3-202ENST00000553340 PNMA8CA0A1B0GUJ8 204 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 COCHO43405 550 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 SUV39H1O43463 412 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 PRMT3O60678 531 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 CLDN7O95471 211 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 APOA1P02647 267 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 COX7A2P14406 83 aa16.98■□□□□ 0.31
SYNE3-202ENST00000553340 TCEA1P23193 301 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms