RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ERAP1Q9NZ08 941 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 CRNNQ9UBG3 495 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 GPR34Q9UPC5 381 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 WDR37Q9Y2I8 494 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 NME7Q9Y5B8 376 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 SNX5Q9Y5X3 404 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 CCDC88BA6NC98 1476 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 GRIN2AQ12879 1464 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 GPRASP1Q5JY77 1395 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PLEKHG2Q9H7P9 1386 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 MEX3AA1L020 520 aaKnown RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 ENO4A6NNW6 628 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 A8MV72 311 aaPredicted RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 CPLX1O14810 134 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 P4HA2O15460 535 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 NEMFO60524 1076 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 ERLIN1O75477 346 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 NEBLO76041 1014 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 APBB3O95704 486 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PAHP00439 452 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 ZSCAN5DPP0CG00 497 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 SMIM18P0DKX4 95 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 GJA1P17302 382 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 ALOX12P18054 663 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 JAK1P23458 1154 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PRKAR2BP31323 418 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 S100A5P33763 92 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 LEPRP48357 1165 aaKnown RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 STAT2P52630 851 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 NUCB2P80303 420 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 TAF10Q12962 218 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PPP2R5CQ13362 524 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 DRP2Q13474 957 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 CUL4AQ13619 759 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 HERC3Q15034 1050 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 RCN1Q15293 331 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 SLC1A5Q15758 541 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 CA9Q16790 459 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 SNAI3Q3KNW1 292 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 TTC31Q49AM3 519 aaPredicted RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 CCDC152Q4G0S7 254 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 FAAP20Q6NZ36 180 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 LRRC43Q8N309 656 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 RAB42Q8N4Z0 105 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 MINDY1Q8N5J2 469 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 SMYD1Q8NB12 490 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 ZNRF4Q8WWF5 429 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 EXOC4Q96A65 974 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 DHX58Q96C10 678 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 LRRC45Q96CN5 670 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 SPDL1Q96EA4 605 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 RAD9AQ99638 391 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 OSBPL10Q9BXB5 764 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 OR2B2Q9GZK3 357 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 CPVLQ9H3G5 476 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PDE7BQ9NP56 450 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 EQTNQ9NQ60 294 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 ZNHIT6Q9NWK9 470 aaKnown RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 FBXL5Q9UKA1 691 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 PPP2R2CQ9Y2T4 447 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 RIMS1Q86UR5 1692 aaKnown RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 PCF11O94913 1555 aaKnown RBP3.42□□□□□ -1.86
CD44-217ENST00000525348 ADAMTS12P58397 1594 aa3.42□□□□□ -1.86
CD44-217ENST00000525348 E9PQ18 207 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 PDLIM1O00151 329 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 KLHL41O60662 606 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ATP6V1G1O75348 118 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ZNF189O75820 626 aaPredicted RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 TSPAN9O75954 239 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 SLC4A1P02730 911 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 TPM1P09493 284 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 DANCRP0C864 163 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 PCP11498 1178 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 MPZP25189 248 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 RDXP35241 583 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 OPRL1P41146 370 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 CD86P42081 329 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 MTHFRP42898 656 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 MAGEA9P43362 315 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 NUCB1Q02818 461 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 PPIDQ08752 370 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 MRPL28Q13084 256 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 COG2Q14746 738 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 TNIP1Q15025 636 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 NTRK2Q16620 822 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 SYT14P1Q58G82 188 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 RILPL1Q5EBL4 403 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 CATSPER4Q7RTX7 472 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ERC1Q8IUD2 1116 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 LSMEM2Q8N112 164 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 SPERTQ8NA61 448 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 OR10S1Q8NGN2 331 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ACMSDQ8TDX5 336 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 TEKT4Q8WW24 435 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 SSMEM1Q8WWF3 244 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 PRPF31Q8WWY3 499 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 PIBF1Q8WXW3 757 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.41□□□□□ -1.86
CD44-217ENST00000525348 TMCO6Q96DC7 493 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 RBM14Q96PK6 669 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms