RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 BIKQ13323 160 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 ATP13A5Q4VNC0 1218 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 TUBA3EQ6PEY2 450 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 KLHL35Q6PF15 583 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 ADGRG2Q8IZP9 1017 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 GHDCQ8N2G8 530 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 RHEBL1Q8TAI7 183 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 CNIH3Q8TBE1 160 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF382Q96SR6 550 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 POLR2J3Q9H1A7 115 aaKnown RBP11.38□□□□□ -0.59
SYNPO-204ENST00000519664 GSTO2Q9H4Y5 243 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 NKIRAS2Q9NYR9 191 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 PCDHGA4Q9Y5G9 962 aa11.38□□□□□ -0.59
SYNPO-204ENST00000519664 EFCAB9A8MZ26 197 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 GNB5O14775 395 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 SMAD6O43541 496 aaKnown RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 CCNB2O95067 398 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 NFATC1O95644 943 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 FDXRP22570 491 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 STT3AP46977 705 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 CLCN2P51788 898 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 RPS3AP61247 264 aaKnown RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 TUBA3CQ13748 450 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 C11orf88Q6PI97 169 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 TICAM1Q8IUC6 712 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LCN9Q8WX39 176 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DIRAS2Q96HU8 199 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 HSH2DQ96JZ2 352 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LMLNQ96KR4 655 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ADAP2Q9NPF8 381 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 SNTG1Q9NSN8 517 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ADAM30Q9UKF2 790 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 PCDHGB3Q9Y5G1 929 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 PCDHGA7Q9Y5G6 932 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LEFTY2O00292 366 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LEFTY1O75610 366 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 RFPL2O75678 378 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 EBLN1P0CF75 366 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LAMP2P13473 410 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF24P17028 368 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ALDH3A2P51648 485 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 SCARB2Q14108 478 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 PLCH1Q4KWH8 1693 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 CXorf57Q6NSI4 855 aaKnown RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM145Q8NBT3 493 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DNASE1L2Q92874 299 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 TBC1D17Q9HA65 648 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 SPEF1Q9Y4P9 236 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DDX60LQ5H9U9 1706 aaKnown RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ABHD14A-ACY1A0A1B0GW23 586 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 A0A1B0GW55 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 TSPAN6O43657 245 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 PDYNP01213 254 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L2P0CJ85 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L3P0CJ86 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L4P0CJ87 422 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L5P0CJ88 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L6P0CJ89 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4L7P0CJ90 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF8P17098 575 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 NT5EP21589 574 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 AP1S2P56377 157 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 RGS1Q08116 209 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 CTC1Q2NKJ3 1217 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 LETMD1Q6P1Q0 360 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 KDELC1Q6UW63 502 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 USP30Q70CQ3 517 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 CPA6Q8N4T0 437 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 PGAP3Q96FM1 320 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-204ENST00000519664 AIG1Q9NVV5 245 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 DUX4Q9UBX2 424 aa11.37□□□□□ -0.59
SYNPO-204ENST00000519664 FGF18O76093 207 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 C8orf89P0DMQ9 161 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 AVPR1BP47901 424 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 RAB8AP61006 207 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 OLR1P78380 273 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 RAPSNQ13702 412 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TEAD4Q15561 434 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 COLEC12Q5KU26 742 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 IER5LQ5T953 404 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TAS1R1Q7RTX1 841 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ADGRG6Q86SQ4 1221 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 GALNT13Q8IUC8 556 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 HS3ST5Q8IZT8 346 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 KLHDC9Q8NEP7 349 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 OR13J1Q8NGT2 312 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 NFKBIDQ8NI38 313 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 SHKBP1Q8TBC3 707 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 MZB1Q8WU39 189 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TFGQ92734 400 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 PYURFQ96I23 114 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 MTRRQ9UBK8 725 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 KCNK6Q9Y257 313 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 MAGED1Q9Y5V3 778 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 HAT1O14929 419 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 GABBR2O75899 941 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 BCHEP06276 602 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CSF2RAP15509 400 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CDKL1Q00532 357 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms