RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SDC2P34741 201 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SHMT2P34897 504 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 RPL34P49207 117 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CLDN8P56748 225 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TAS2R41P59536 307 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 IL18Q14116 193 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 GALNT10Q86SR1 603 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TBC1D15Q8TC07 691 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 COL26A1Q96A83 441 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SH3YL1Q96HL8 342 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 POLR2J3Q9H1A7 115 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SP140LQ9H930 580 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ABCB8Q9NUT2 735 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF451Q9Y4E5 1061 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDHB14Q9Y5E9 798 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 STRCQ7RTU9 1775 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 A0A0U1RQS6 177 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 GRXCR2A6NFK2 248 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MROH6A6NGR9 719 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 UPK3BL1B0FP48 263 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 UPK3BL2E5RIL1 263 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 NME6O75414 186 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MAPK12P53778 367 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PNLIPRP1P54315 467 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 NPRL3Q12980 569 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 LRRC66Q68CR7 880 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 C16orf62Q7Z3J2 963 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 THOC6Q86W42 341 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 NPAS3Q8IXF0 933 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 OXR1Q8N573 874 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 OR2AP1Q8NGE2 309 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC22A17Q8WUG5 538 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 GEMIN6Q8WXD5 167 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 DPH2Q9BQC3 489 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 FARSBQ9NSD9 589 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ENPP5Q9UJA9 477 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 RPL36Q9Y3U8 105 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SPACA6W5XKT8 324 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TRBC2A0A5B9 178 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 IRGMA1A4Y4 181 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 KRBA1A5PL33 1030 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TPST2O60704 377 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TGFB1P01137 390 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 FGBP02675 491 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CCNYL3P0C7X3 344 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ATP1B2P14415 290 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 C4BPBP20851 252 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 GTF2E2P29084 291 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CDK6Q00534 326 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 HSPB3Q12988 150 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TARDBPQ13148 414 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC13A2Q13183 592 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SELPLGQ14242 412 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SHQ1Q6PI26 577 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 DNAJB7Q7Z6W7 309 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 VTCN1Q7Z7D3 282 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SPNS2Q8IVW8 549 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TTC9BQ8N6N2 239 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CHDHQ8NE62 594 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 NFKBIDQ8NI38 313 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF675Q8TD23 568 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SLCO4A1Q96BD0 722 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PKP4Q99569 1192 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MGME1Q9BQP7 344 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MARCH7Q9H992 704 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CCDC177Q9NQR7 707 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 VPS51Q9UID3 782 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF232Q9UNY5 417 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PMF1-BGLAPU3KQ54 211 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ABCA3Q99758 1704 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 COCHO43405 550 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 RETP07949 1114 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 OR1E2P47887 323 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC11A1P49279 550 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ST3GAL4Q11206 333 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 PLA2G4EQ3MJ16 856 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 LCN1P1Q5VSP4 162 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 PLEKHG7Q6ZR37 379 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 TPRG1Q6ZUI0 275 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 DCP2Q8IU60 420 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 MDGA1Q8NFP4 955 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 NDNFQ8TB73 568 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 AIF1LQ9BQI0 150 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 BOCQ9BWV1 1114 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 HSPE1-MOB4S4R3N1 261 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ISPDA4D126 451 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 TLR4O00206 839 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 AP3D1O14617 1153 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 STX11O75558 287 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 OAZ2O95190 189 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ALPLP05186 524 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ITIH1P19827 911 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SSR2P43308 183 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 PHC1P78364 1004 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF45Q02386 682 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 TBC1D25Q3MII6 688 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 CRTC2Q53ET0 693 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SPIN4Q56A73 249 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms