RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 AGTRAPQ6RW13 159 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 MBOAT1Q6ZNC8 495 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 CAPN12Q6ZSI9 719 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 COX15Q7KZN9 410 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 CLEC1AQ8NC01 280 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 CDKL2Q92772 493 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 ALKBH8Q96BT7 664 aaKnown RBP14.4□□□□□ -0.1
USP39-217ENST00000491659 C10orf90Q96M02 699 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 TRIM54Q9BYV2 358 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 ATG10Q9H0Y0 220 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 ZNF304Q9HCX3 659 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 SAYSD1Q9NPB0 183 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 ARL15Q9NXU5 204 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 MOCS1Q9NZB8 636 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 CDC23Q9UJX2 597 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 CDC14AQ9UNH5 594 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 PCDHGB7Q9Y5F8 929 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 MED13Q9UHV7 2174 aa14.4□□□□□ -0.1
USP39-217ENST00000491659 H7BY64 318 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 HAT1O14929 419 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 CEACAM4O75871 244 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 WISP1O95388 367 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 TSPAN12O95859 305 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 PDGFAP04085 211 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 UMODP07911 640 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 ENO2P09104 434 aaPredicted RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 ZNF37AP17032 561 aaPredicted RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 FBLP22087 321 aaKnown RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 FOXL2P58012 376 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 RPS15AP62244 130 aaKnown RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 CAV1Q03135 178 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 OCA2Q04671 838 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 CBLBQ13191 982 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 NAE1Q13564 534 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 HKDC1Q2TB90 917 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 PRTGQ2VWP7 1150 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 GARNL3Q5VVW2 1013 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 CAPN13Q6MZZ7 669 aaPredicted RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 PPP1R32Q7Z5V6 425 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 ZC3HC1Q86WB0 502 aaKnown RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 C17orf64Q86WR6 236 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 DTWD1Q8N5C7 304 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 FDCSPQ8NFU4 85 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 NACC2Q96BF6 587 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 MVB12AQ96EY5 273 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 PRAP1Q96NZ9 151 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 OR2A5Q96R48 311 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 SPSB2Q99619 263 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 SOX17Q9H6I2 414 aaPredicted RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 TMEM184CQ9NVA4 438 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 P4HTMQ9NXG6 502 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 GPR83Q9NYM4 423 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 GRHL1Q9NZI5 618 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 TXNDC16Q9P2K2 825 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 CTSFQ9UBX1 484 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 RUVBL1Q9Y265 456 aaKnown RBP14.39□□□□□ -0.11
USP39-217ENST00000491659 ZNF451Q9Y4E5 1061 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 PSAT1Q9Y617 370 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 BSNQ9UPA5 3926 aa14.39□□□□□ -0.11
USP39-217ENST00000491659 A6NL46 340 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 AGPSO00116 658 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 KLHL41O60662 606 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 MED26O95402 600 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 ANXA5P08758 320 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 MMP11P24347 488 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 CSRP3P50461 194 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 PGGT1BP53609 377 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 KCNC4Q03721 635 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 RBBP7Q16576 425 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 NDUFA9Q16795 377 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 DCAF10Q5QP82 559 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 DUPD1Q68J44 220 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 LCTLQ6UWM7 567 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 ZNF572Q7Z3I7 529 aaPredicted RBP14.38□□□□□ -0.11
USP39-217ENST00000491659 HPS6Q86YV9 775 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 PLD3Q8IV08 490 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 NKAPQ8N5F7 415 aaKnown RBP14.38□□□□□ -0.11
USP39-217ENST00000491659 ATL1Q8WXF7 558 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 VPS39Q96JC1 886 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 VPS50Q96JG6 964 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 C16orf45Q96MC5 204 aaPredicted RBP14.38□□□□□ -0.11
USP39-217ENST00000491659 PHACTR1Q9C0D0 580 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 RHOJQ9H4E5 214 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 MLXIPLQ9NP71 852 aa14.38□□□□□ -0.11
USP39-217ENST00000491659 ZNF282Q9UDV7 671 aaPredicted RBP14.38□□□□□ -0.11
USP39-217ENST00000491659 DPM1O60762 260 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 GUCA1CO95843 209 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 SSTR1P30872 391 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 GRK3P35626 688 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 SLC12A2P55011 1212 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 PLTPP55058 493 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 DSG2Q14126 1118 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 COLEC12Q5KU26 742 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 SHISA6Q6ZSJ9 500 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 GALNT16Q8N428 558 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 MIEF2Q96C03 454 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 THAP11Q96EK4 314 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 PDLIM5Q96HC4 596 aaKnown RBP14.37□□□□□ -0.11
USP39-217ENST00000491659 HAUS8Q9BT25 410 aa14.37□□□□□ -0.11
USP39-217ENST00000491659 CRB3Q9BUF7 120 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms