RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SLC28A2O43868 658 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 PRKRAO75569 313 aaKnown RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 EFNA1P20827 205 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 SCP2P22307 547 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 CA4P22748 312 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 HOXA1P49639 335 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 TRA2AQ13595 282 aaKnown RBP eCLIP4.73□□□□□ -1.655e-6■■■■□ 20.3
UPF3B-203ENST00000478840 PDE7AQ13946 482 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 KIF19Q2TAC6 998 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 NEK5Q6P3R8 708 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 UNQ6126/PRO20091Q6UXV3 157 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 TUBA1AQ71U36 451 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 MIER3Q7Z3K6 550 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 SERPINA12Q8IW75 414 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 CLEC1AQ8NC01 280 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 URGCPQ8TCY9 931 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 TSACCQ96A04 125 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 CFAP36Q96G28 342 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 NAP1L3Q99457 506 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 NDNQ99608 321 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 TUBA1CQ9BQE3 449 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF559Q9BR84 538 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 FSD1Q9BTV5 496 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 HOOK1Q9UJC3 728 aaKnown RBP4.73□□□□□ -1.65
UPF3B-203ENST00000478840 AGTPBP1Q9UPW5 1226 aa4.73□□□□□ -1.65
UPF3B-203ENST00000478840 TRAV18A0A075B6X5 111 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 LOC101059948A0A1B0GTJ6 334 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 ANKRD61A6NGH8 418 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 PRDM1O75626 825 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 STAM2O75886 525 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 BAG3O95817 575 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SBK2P0C263 348 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SP9P0CG40 484 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 IGHV4-31P0DP07 118 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 DLATP10515 647 aaKnown RBP4.72□□□□□ -1.65
UPF3B-203ENST00000478840 CDH3P22223 829 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 AHCYP23526 432 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 EPHA2P29317 976 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 PDLIM4P50479 330 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SLC34A1Q06495 639 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 TRAP1Q12931 704 aaKnown RBP4.72□□□□□ -1.65
UPF3B-203ENST00000478840 TSTA3Q13630 321 aaPredicted RBP4.72□□□□□ -1.65
UPF3B-203ENST00000478840 GAMTQ14353 236 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 PDK1Q15118 436 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 CCDC142Q17RM4 750 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 PDLIM3Q53GG5 364 aaPredicted RBP4.72□□□□□ -1.65
UPF3B-203ENST00000478840 DNAJC21Q5F1R6 531 aaKnown RBP4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SIRPB2Q5JXA9 342 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SLC35D3Q5M8T2 416 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 PM20D1Q6GTS8 502 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 FUT10Q6P4F1 479 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 KCTD8Q6ZWB6 473 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 ASPGQ86U10 573 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 RTN4RL2Q86UN3 420 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 CNNM3Q8NE01 707 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 KIAA1524Q8TCG1 905 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SAP25Q8TEE9 199 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 SORCS1Q8WY21 1168 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 TAF4BQ92750 862 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 TMEM186Q96B77 213 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 NAPBQ9H115 298 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 ZDHHC6Q9H6R6 413 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 C10orf88Q9H8K7 445 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 LRRC4Q9HBW1 653 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 MALT1Q9UDY8 824 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 TSPAN16Q9UKR8 245 aa4.72□□□□□ -1.65
UPF3B-203ENST00000478840 ANKDD1BA6NHY2 528 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 MYMKA6NI61 221 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 TULP2O00295 520 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PPP1R3DO95685 299 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CXCL14O95715 111 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CCNA2P20248 432 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 MSH3P20585 1137 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CA6P23280 308 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 DGKAP23743 735 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CSTF2P33240 577 aaKnown RBP eCLIP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CDKN1AP38936 164 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 ATXN3P54252 364 aaPredicted RBP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 EVCP57679 992 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 GFPT1Q06210 699 aaPredicted RBP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CETN1Q12798 172 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 MAPK11Q15759 364 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 DCAF10Q5QP82 559 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PDSS1Q5T2R2 415 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF852Q6ZMS4 543 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 TOM1L2Q6ZVM7 507 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 C1orf186Q6ZWK4 172 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PRUNE1Q86TP1 453 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CCDC60Q8IWA6 550 aaPredicted RBP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 LAX1Q8IWV1 398 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CCDC63Q8NA47 563 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 FCRL4Q96PJ5 515 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PRMT1Q99873 361 aaKnown RBP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PKP2Q99959 881 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 TMEM204Q9BSN7 226 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 IDI2Q9BXS1 227 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 SLC29A3Q9BZD2 475 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 TMEM245Q9H330 911 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CPVLQ9H3G5 476 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms