RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 APOA4P06727 396 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 ST6GAL1P15907 406 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 UGT2B7P16662 529 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TPSB2P20231 275 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CYP2A7P20853 494 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 PTPN4P29074 926 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CCR7P32248 378 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 KCNJ1P48048 391 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 NPY2RP49146 381 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CRADDP78560 199 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SARNPP82979 210 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 HSPA14Q0VDF9 509 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SEMA3AQ14563 771 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TMED2Q15363 201 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TPSAB1Q15661 275 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 IZUMO3Q5VZ72 239 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 ARMC3Q5W041 872 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 PTRHD1Q6GMV3 140 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 LRRC8BQ6P9F7 803 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 NAPRTQ6XQN6 538 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 UNC5AQ6ZN44 842 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF534Q76KX8 674 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SYVN1Q86TM6 617 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 LRRC6Q86X45 466 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC22A15Q8IZD6 547 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 MPP5Q8N3R9 675 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 C19orf47Q8N9M1 422 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 FBXO27Q8NI29 283 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 C9orf43Q8TAL5 461 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 GSDMBQ8TAX9 411 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 ASZ1Q8WWH4 475 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 N4BP2L2Q92802 583 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 MR1Q95460 341 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CLIP3Q96DZ5 547 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TRAPPC9Q96Q05 1148 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 PANX3Q96QZ0 392 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 OR2A14Q96R47 310 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CARD6Q9BX69 1037 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC7A5P2Q9GIP4 190 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TWSG1Q9GZX9 223 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 ACTL8Q9H568 366 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 MRM3Q9HC36 420 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TREX1Q9NSU2 369 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 OR6C2Q9NZP2 312 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 GNPTGQ9UJJ9 305 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 SERTAD3Q9UJW9 196 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 JRKLQ9Y4A0 524 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 MED13Q9UHV7 2174 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 TNRC6AQ8NDV7 1962 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 A0A0J9YY10 115 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 IQCF5A8MTL0 148 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 E7EQ34 232 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 MKRN2OSH3BPM6 223 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 KPNA5O15131 536 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PFDN6O15212 129 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 GPC4O75487 556 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 NDUFS3O75489 264 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 SLCO2B1O94956 709 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 CHRM5P08912 532 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 HBQ1P09105 142 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PVRP15151 417 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF20P17024 532 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 RPS3P23396 243 aaKnown RBP eCLIP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 MGAT1P26572 445 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 AOAHP28039 575 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 NMBRP28336 390 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 RORAP35398 523 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PMS2P54278 862 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 CSE1LP55060 971 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 ITGA1P56199 1179 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 ABRQ12979 859 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 GPS2Q13227 327 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 KIR2DS3Q14952 304 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 UGT8Q16880 541 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 LACTB2Q53H82 288 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PLEKHS1Q5SXH7 462 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 RNF187Q5TA31 235 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 CPZQ66K79 652 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 MRNIPQ6NTE8 343 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 FAM199XQ6PEV8 388 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 UNC5DQ6UXZ4 953 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF517Q6ZMY9 492 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 CDHR3Q6ZTQ4 885 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 LDB1Q86U70 411 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 DCUN1D3Q8IWE4 304 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 GPR135Q8IZ08 494 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 DSELQ8IZU8 1212 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 KRT222Q8N1A0 295 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 OTUD6BQ8N6M0 293 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PRELID2Q8N945 189 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 OR1L3Q8NH93 324 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 LKAAEAR1Q8TD35 194 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 THAP4Q8WY91 577 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC22A18Q96BI1 424 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 PBKQ96KB5 322 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 NAP1L3Q99457 506 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 NRTNQ99748 197 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 KIFC1Q9BW19 673 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 AP1M1Q9BXS5 423 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms