RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMTC4Q5T4D3 741 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 HES3Q5TGS1 186 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 FRMD7Q6ZUT3 714 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 MILR1Q7Z6M3 343 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 B3GNT8Q7Z7M8 397 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 PAQR7Q86WK9 346 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CACTIN-AS1Q8N1I8 211 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 TBC1D19Q8N5T2 526 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 OR4K1Q8NGD4 311 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 ADAMTS14Q8WXS8 1223 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 GRAMD1AQ96CP6 724 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 MOCOSQ96EN8 888 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 WDR34Q96EX3 536 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 PTCD3Q96EY7 689 aaKnown RBP15.16■□□□□ 0.02
USP40-206ENST00000443711 SLC41A2Q96JW4 573 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 AIF1LQ9BQI0 150 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 TRMOQ9BU70 441 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 EFCAB11Q9BUY7 163 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 STRADBQ9C0K7 418 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CHRNA10Q9GZZ6 450 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 ACTR8Q9H981 624 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 PDE7BQ9NP56 450 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 SOHLH2Q9NX45 425 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 BTRCQ9Y297 605 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 MDC1Q14676 2089 aaKnown RBP15.16■□□□□ 0.02
USP40-206ENST00000443711 TMEM114B3SHH9 223 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 HGSO14964 777 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 UGDHO60701 494 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 CSO75390 466 aaKnown RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 WFS1O76024 890 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 CLDN9O95484 217 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 EBLN1P0CF75 366 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 NELFEP18615 380 aaKnown RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 TSPAN8P19075 237 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 BGNP21810 368 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 CSTF2P33240 577 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP40-206ENST00000443711 ARL1P40616 181 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 HNF4AP41235 474 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 MLLT3P42568 568 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 ATP1A2P50993 1020 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 PKNOX1P55347 436 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 RELAQ04206 551 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 LCP2Q13094 533 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 RCN2Q14257 317 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 PUM1Q14671 1186 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP40-206ENST00000443711 ZIC1Q15915 447 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 HIST2H2ACQ16777 129 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 ZC3H12BQ5HYM0 836 aaKnown RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 PAGE2BQ5JRK9 111 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 LIPJQ5W064 366 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 HIST2H2AA3Q6FI13 130 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 ZCCHC23Q6ZST2 131 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 TMPRSS12Q86WS5 348 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 FAM129CQ86XR2 697 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 KRT78Q8N1N4 520 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 D2HGDHQ8N465 521 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 OR6Y1Q8NGX8 325 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 FAM76AQ8TAV0 307 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 RAB3IL1Q8TBN0 382 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 DYDC1Q8WWB3 177 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 MAGEB10Q96LZ2 347 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 PITHD1Q9GZP4 211 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 DRC3Q9H069 523 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 EML4Q9HC35 981 aaKnown RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 AKAP7Q9P0M2 348 aaPredicted RBP15.15■□□□□ 0.02
USP40-206ENST00000443711 CLCA2Q9UQC9 943 aa15.15■□□□□ 0.02
USP40-206ENST00000443711 TRBC2A0A5B9 178 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 PPP6CO00743 305 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 PRAMEF10O60809 474 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 PRAMEF4O60810 478 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 JUPP14923 745 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 EZRP15311 586 aaKnown RBP15.14■□□□□ 0.01
USP40-206ENST00000443711 VARSP26640 1264 aaKnown RBP15.14■□□□□ 0.01
USP40-206ENST00000443711 PDX1P52945 283 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 TRAF3Q13114 568 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 STX3Q13277 289 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 E2F2Q14209 437 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 PRAMEF9Q5VWM5 478 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 ATG16L1Q676U5 607 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 GPRIN3Q6ZVF9 776 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 MYLK4Q86YV6 388 aaPredicted RBP15.14■□□□□ 0.01
USP40-206ENST00000443711 GALNT15Q8N3T1 639 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 DNAJC22Q8N4W6 341 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 DCBLD1Q8N8Z6 715 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 L3MBTL4Q8NA19 623 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 AGBL5Q8NDL9 886 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 RCBTB1Q8NDN9 531 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 OR4F6Q8NGB9 312 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 OR52B6Q8NGF0 335 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 ZNF382Q96SR6 550 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 NT5DC2Q9H857 520 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 MANSC1Q9H8J5 431 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 FAM60AQ9NP50 221 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 MID1IP1Q9NPA3 183 aa15.14■□□□□ 0.01
USP40-206ENST00000443711 GEMIN8Q9NWZ8 242 aaKnown RBP15.14■□□□□ 0.01
USP40-206ENST00000443711 PTPRBP23467 1997 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 HAT1O14929 419 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 CTSVO60911 334 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 SNUPNO95149 360 aaKnown RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 HOXD11P31277 338 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms