RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 KIAA1328Q86T90 577 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 OTUD6BQ8N6M0 293 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 PPHLN1Q8NEY8 458 aaKnown RBP7.68□□□□□ -1.18
VIM-202ENST00000421459 OR9A1PQ8NGU1 263 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 OR9A4Q8NGU2 314 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 GSDMBQ8TAX9 411 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 HMGCLL1Q8TB92 370 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 ADAMTS18Q8TE60 1221 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 MOCOSQ96EN8 888 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 MFSD3Q96ES6 412 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 HES6Q96HZ4 224 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 IMMP1LQ96LU5 166 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 SIGLEC12Q96PQ1 595 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 OR2A5Q96R48 311 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 PANX2Q96RD6 677 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 NPAS2Q99743 824 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 RAB11FIP5Q9BXF6 653 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 KLHL1Q9NR64 748 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 TREX1Q9NSU2 369 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 TAC3Q9UHF0 121 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 PCYOX1Q9UHG3 505 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 GNPTGQ9UJJ9 305 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 TINAGQ9UJW2 476 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 ZNF148Q9UQR1 794 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 CRYL1Q9Y2S2 319 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 CAPN6Q9Y6Q1 641 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 SEC16AO15027 2179 aa7.68□□□□□ -1.18
VIM-202ENST00000421459 LOC102723996A0A087X1L8 192 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 OR5H15A6NDH6 313 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 ERI2A8K979 691 aaKnown RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 F8W8V4 182 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 DNAJB6O75190 326 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 COX6B1P14854 86 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 CHRM3P20309 590 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 RPS3P23396 243 aaKnown RBP eCLIP7.67□□□□□ -1.189e-7■□□□□ 11.3
VIM-202ENST00000421459 STIP1P31948 543 aaKnown RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 PPARGP37231 505 aaPredicted RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 KIR3DL1P43629 444 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 TTPAP49638 278 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 HSF1Q00613 529 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 CUL1Q13616 776 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 GBX1Q14549 363 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 KLHL38Q2WGJ6 581 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 ZNF766Q5HY98 468 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 AARS2Q5JTZ9 985 aaKnown RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 ABHD17BQ5VST6 288 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 SPINK14Q6IE38 97 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 ZNF425Q6IV72 752 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 TMEM205Q6UW68 189 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 C3P1Q6ZMU1 363 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 BNC2Q6ZN30 1099 aaPredicted RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 ADCK2Q7Z695 626 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 TMEM139Q8IV31 216 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 BEST3Q8N1M1 668 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 RAB42Q8N4Z0 105 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 SMPDL3AQ92484 453 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 LPGAT1Q92604 370 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 VPS50Q96JG6 964 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 FOPNLQ96NB1 174 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 PANX3Q96QZ0 392 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 CYTH2Q99418 400 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 TRIM8Q9BZR9 551 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 TGIF2Q9GZN2 237 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 VN1R1Q9GZP7 353 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 RIC8BQ9NVN3 520 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 SYBUQ9NX95 663 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 SPATA7Q9P0W8 599 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 ABI3Q9P2A4 366 aa7.67□□□□□ -1.18
VIM-202ENST00000421459 SUCOQ9UBS9 1254 aaKnown RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 KLF2Q9Y5W3 355 aaPredicted RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 SNRNP200O75643 2136 aaKnown RBP7.67□□□□□ -1.18
VIM-202ENST00000421459 ZFHX3Q15911 3703 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 NUP210LQ5VU65 1888 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 PCM1Q15154 2024 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 POLEQ07864 2286 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 A0A1W2PQ72 361 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MIF4GDA9UHW6 222 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 H7BY64 318 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SGK494L7N484 410 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MYO1CO00159 1063 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SLC19A2O60779 497 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 AVILO75366 819 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 PSIP1O75475 530 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 ZNF189O75820 626 aaPredicted RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 FKBP9O95302 570 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 IPO7O95373 1038 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 SLC16A8O95907 504 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SYF2O95926 243 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 CRYABP02511 175 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 ANXA5P08758 320 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 C8orf89P0DMQ9 161 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ERGP11308 486 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 CD96P40200 585 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 CCNFP41002 786 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 KCNJ1P48048 391 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 PNLIPRP1P54315 467 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 PRDX1Q06830 199 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 TUBA3CQ13748 450 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SIX1Q15475 284 aaPredicted RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 TRIP13Q15645 432 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms