RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RAVER1Q8IY67 606 aaKnown RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 GPR156Q8NFN8 814 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CANT1Q8WVQ1 401 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 FAM120CQ9NX05 1096 aaKnown RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 GLTPQ9NZD2 209 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SPG21Q9NZD8 308 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ASTN1O14525 1302 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 NUDT1P36639 197 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CTXN3Q4LDR2 81 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 AGAP6Q5VW22 663 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 DOK6Q6PKX4 331 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PXKQ7Z7A4 578 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 OR52J3Q8NH60 311 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 DNASE1L2Q92874 299 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 AGAP4Q96P64 663 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 A0A075B6Q4 140 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SSR2P43308 183 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 MAP1BP46821 2468 aaKnown RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 DNAJB13P59910 316 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PET117Q6UWS5 81 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF676Q8N7Q3 588 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ANKRD60Q9BZ19 345 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 NANSQ9NR45 359 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 WASF3Q9UPY6 502 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CNTNAP2Q9UHC6 1331 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PCM1Q15154 2024 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ADAM12O43184 909 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ANXA4P09525 319 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PTGER3P43115 390 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM69Q5SWH9 247 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 TIFABQ6ZNK6 161 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ASGR1P07306 291 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CHRNB1P11230 501 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 HSD3B2P26439 372 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 HGSNATQ68CP4 663 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 COL26A1Q96A83 441 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CYP2S1Q96SQ9 504 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SDCBP2Q9H190 292 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 CDT1Q9H211 546 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ABCG5Q9H222 651 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 EME2A4GXA9 379 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 LCMT2O60294 686 aaKnown RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 RBBP9O75884 186 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 FARS2O95363 451 aaKnown RBP12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SNAPC3Q92966 411 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM39BQ9GZU3 492 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SLC38A1Q9H2H9 487 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 SH2B3Q9UQQ2 575 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF670-ZNF695F2Z2N8 137 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MLLT1Q03111 559 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 LASP1Q14847 261 aaKnown RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PROX2Q3B8N5 592 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 NOMO2Q5JPE7 1267 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 KCNIP4Q6PIL6 250 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 IDO2Q6ZQW0 420 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 CMC1Q7Z7K0 106 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ZBTB2Q8N680 514 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 LRRC52Q8N7C0 313 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 C7orf57Q8NEG2 295 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ASPNQ9BXN1 380 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PORCNQ9H237 461 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 CCM2LQ9NUG4 571 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ZNHIT2Q9UHR6 403 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 DNMT3LQ9UJW3 386 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 HMX3A6NHT5 357 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 IL4RP24394 825 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TGFB2P61812 414 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 SNAPC2Q13487 334 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 METAP1DQ6UB28 335 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TMCO2Q7Z6W1 182 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 HIST1H2AAQ96QV6 131 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ENY2Q9NPA8 101 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 IRS2Q9Y4H2 1338 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 SCARF1Q14162 830 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MED27Q6P2C8 311 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 FAM183BPQ6ZVS7 135 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 OR10A4Q9H209 315 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 GNG8Q9UK08 70 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 FBXL21Q9UKT6 434 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 KRBA1A5PL33 1030 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TCEA1P23193 301 aaKnown RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 FLI1Q01543 452 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MON1BQ7L1V2 547 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 OTOP1Q7RTM1 612 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 COMTD1Q86VU5 262 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ZSWIM9Q86XI8 627 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 NAT16Q8N8M0 369 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 GATA5Q9BWX5 397 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 NPEPPSL1A6NEC2 478 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 RCCD1A6NED2 376 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 KELP23276 732 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PITPNBP48739 271 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 HNRNPA0Q13151 305 aaKnown RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MOGSQ13724 837 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TSPYL5Q86VY4 417 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 FAM151AQ8WW52 585 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PTPRMP28827 1452 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 LOC100509620A0A075B734 347 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF35P13682 527 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms