RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TBPL1P62380 186 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 DYNC1I2Q13409 638 aaKnown RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ADNP2Q6IQ32 1131 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 PDE12Q6L8Q7 609 aaKnown RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ADGRD2Q7Z7M1 963 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 TMPRSS11BQ86T26 416 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ZCCHC7Q8N3Z6 543 aaKnown RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 OR7G3Q8NG95 312 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ZNF480Q8WV37 535 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 MPP4Q96JB8 637 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 RDH12Q96NR8 316 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 PRM3Q9NNZ6 103 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 OTOL1A6NHN0 477 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 SCAMP2O15127 329 aaKnown RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 LZTS3O60299 673 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 EPN2O95208 641 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ETHE1O95571 254 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 IST1P53990 364 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 LAPTM5Q13571 262 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 GTF2H3Q13889 308 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ZIK1Q3SY52 487 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 CAPN13Q6MZZ7 669 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 SLCO4C1Q6ZQN7 724 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ZNF551Q7Z340 670 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ADHFE1Q8IWW8 467 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 NPAS3Q8IXF0 933 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 SYTL1Q8IYJ3 562 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 ALDH16A1Q8IZ83 802 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 C1orf52Q8N6N3 182 aaKnown RBP23.16■■□□□ 1.3
TRIM54-201ENST00000296098 HUS1BQ8NHY5 278 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 NEIL2Q969S2 332 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 TMIGD2Q96BF3 282 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 MMP20O60882 483 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 SCN2BO60939 215 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 ASMTP46597 345 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 E2F2Q14209 437 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 ZNF234Q14588 700 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 SF1Q15637 639 aaKnown RBP23.15■■□□□ 1.3
TRIM54-201ENST00000296098 SPIN4Q56A73 249 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 PYURFQ96I23 114 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 ASB16Q96NS5 453 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 DYRK4Q9NR20 520 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 RSL24D1Q9UHA3 163 aaKnown RBP23.15■■□□□ 1.3
TRIM54-201ENST00000296098 CLIC1O00299 241 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 ENGP17813 658 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 RAE1P78406 368 aaKnown RBP23.15■■□□□ 1.3
TRIM54-201ENST00000296098 DPTQ07507 201 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 CES5AQ6NT32 575 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 MED27Q6P2C8 311 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 EID3Q8N140 333 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 REPS1Q96D71 796 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 YTHDF1Q9BYJ9 559 aaKnown RBP23.15■■□□□ 1.3
TRIM54-201ENST00000296098 USE1Q9NZ43 259 aa23.15■■□□□ 1.3
TRIM54-201ENST00000296098 HEPACAM2A8MVW5 462 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 CCNDBP1O95273 360 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 VAC14Q08AM6 782 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 PLCL1Q15111 1095 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 ADAMTS16Q8TE57 1224 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 SMARCD2Q92925 531 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF514Q96K75 400 aaPredicted RBP23.14■■□□□ 1.29
TRIM54-201ENST00000296098 FAM129BQ96TA1 746 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 OSBPL10Q9BXB5 764 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 MTIF3Q9H2K0 278 aaKnown RBP23.14■■□□□ 1.29
TRIM54-201ENST00000296098 ATXN10Q9UBB4 475 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 SAMD4AQ9UPU9 718 aaKnown RBP23.14■■□□□ 1.29
TRIM54-201ENST00000296098 MAPRE3Q9UPY8 281 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 DYRK1BQ9Y463 629 aa23.14■■□□□ 1.29
TRIM54-201ENST00000296098 COL4A3Q01955 1670 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 DENND4AQ7Z401 1863 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 SH3BGRLO75368 114 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ANXA4P09525 319 aaPredicted RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 HPCAL1P37235 193 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 MYBPC3Q14896 1274 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 RBBP5Q15291 538 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 CCNYL2Q5T2Q4 361 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ANKRD26P1Q6NSI1 321 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ZCCHC8Q6NZY4 707 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 SPESP1Q6UW49 350 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF621Q6ZSS3 439 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 SFTPA1Q8IWL2 248 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 CLECL1Q8IZS7 167 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 CHTF18Q8WVB6 975 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 RBM4BQ9BQ04 359 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 DUSP26Q9BV47 211 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 RBM4Q9BWF3 364 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TMEM245Q9H330 911 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TOR3AQ9H497 397 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TRIM39Q9HCM9 518 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 C2orf16Q68DN1 1984 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 CPSF4O95639 269 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 LAMP1P11279 417 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 RPS13P62277 151 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ESRRGP62508 458 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 PPP2R2BQ00005 443 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 EPS8Q12929 822 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TSTA3Q13630 321 aaPredicted RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 STARD3Q14849 445 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TMEM52BQ4KMG9 183 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 ERICH5Q6P6B1 374 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 XKR5Q6UX68 686 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms