RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 H0Y3Z8 333 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 M0QYG6 137 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 KLKB1P03952 638 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ATP5BP06576 529 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 FAM90A13PP0C7W8 464 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 FAM90A24PP0C7X0 464 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 XRCC6P12956 609 aaKnown RBP eCLIP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 EGR1P18146 543 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 POLR2EP19388 210 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 HNRNPA2B1P22626 353 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ARL3P36405 182 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ATP6V1E1P36543 226 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 PGFP49763 221 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 VAMP7P51809 220 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF131P52739 623 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 METAP1P53582 386 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 TPTEP56180 551 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 BPIFB3P59826 476 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ST8SIA6P61647 398 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CSNK1G2P78368 415 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 SEMA3AQ14563 771 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 HNRNPA1L2Q32P51 320 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 AMZ1Q400G9 498 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 DNAJC21Q5F1R6 531 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 TPRG1LQ5T0D9 272 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 C9orf64Q5T6V5 341 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ATG16L1Q676U5 607 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 MEX3BQ6ZN04 569 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 C9orf47Q6ZRZ4 202 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 KIAA0408Q6ZU52 694 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 KCNMB4Q86W47 210 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 SFR1Q86XK3 245 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 BRSK2Q8IWQ3 736 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 NUP93Q8N1F7 819 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 STK40Q8N2I9 435 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CARNMT1Q8N4J0 409 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 OR1N1Q8NGS0 311 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ATG4AQ8WYN0 398 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 OVCA2Q8WZ82 227 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 RTP4Q96DX8 246 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC34Q96HJ3 373 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 PCED1BQ96HM7 432 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF560Q96MR9 790 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 JAKMIP1Q96N16 626 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 TRAPPC9Q96Q05 1148 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CTRCQ99895 268 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 THAP7Q9BT49 309 aaPredicted RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM121Q9BTD3 319 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 LRRC61Q9BV99 259 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 PTDSS2Q9BVG9 487 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 C1orf43Q9BWL3 253 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 SLC2A11Q9BYW1 496 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 EDEM3Q9BZQ6 932 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 SPRY4Q9C004 299 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 DCLK3Q9C098 648 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CLPBQ9H078 707 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ILKAPQ9H0C8 392 aaPredicted RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 FOXP1Q9H334 677 aaPredicted RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 TP63Q9H3D4 680 aaPredicted RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC177Q9NQR7 707 aaPredicted RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 GGA2Q9UJY4 613 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 NAALADL1Q9UQQ1 740 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 CACNA1CQ13936 2221 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 IGHV5-10-1A0A0J9YXX1 117 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 A6NL46 340 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 TTC34A8MYJ7 566 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ADAM10O14672 748 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 SLC7A4O43246 635 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ZBTB43O43298 467 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CREG1O75629 220 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 STK17BO94768 372 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CPNE6O95741 557 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 MLYCDO95822 493 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 AHSGP02765 367 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 HMBSP08397 361 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ZDHHC11BP0C7U3 371 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 BTF3P20290 206 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 LMO2P25791 158 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ABCD3P28288 659 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CORO1AP31146 461 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ATP5C1P36542 298 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 LHX1P48742 406 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 LOXL3P58215 753 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 NANOS2P60321 138 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CNTN1Q12860 1018 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 EPS8Q12929 822 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CTBP1Q13363 440 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ASIC2Q16515 512 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF284Q2VY69 593 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 PDLIM3Q53GG5 364 aaPredicted RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 MDH1BQ5I0G3 518 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 TMTC4Q5T4D3 741 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 GPR139Q6DWJ6 353 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 BHLHB9Q6PI77 547 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 KLHL24Q6TFL4 600 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CPLX4Q7Z7G2 160 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 SDCCAG8Q86SQ7 713 aaPredicted RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 PIM3Q86V86 326 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 HPS6Q86YV9 775 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 DIS3L2Q8IYB7 885 aaKnown RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms