RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SERPINB8P50452 374 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 CSNK1G2P78368 415 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 GPS2Q13227 327 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 THEMIS2Q5TEJ8 643 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 FAM199XQ6PEV8 388 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 LCTLQ6UWM7 567 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 TIFABQ6ZNK6 161 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 RNF44Q7L0R7 432 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 TBC1D1Q86TI0 1168 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 BPHLQ86WA6 291 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 CACNA2D3Q8IZS8 1091 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 DTWD1Q8N5C7 304 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 OR8K5Q8NH50 307 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF285Q96NJ3 590 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 RUFY1Q96T51 708 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 DPH1Q9BZG8 443 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SPNS1Q9H2V7 528 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 NMRAL1Q9HBL8 299 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 SERTAD3Q9UJW9 196 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 PTBP2Q9UKA9 531 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 TLK1Q9UKI8 766 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 RAB21Q9UL25 225 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 USP24Q9UPU5 2620 aa13.62□□□□□ -0.23
SHKBP1-217ENST00000598558 ZZEF1O43149 2961 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 LAMA5O15230 3695 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 A0A1W2PPM1 405 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 UBXN8O00124 270 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 TERTO14746 1132 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF749O43361 778 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 LCMT2O60294 686 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 PRAMEF4O60810 478 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 KRT38O76015 456 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 KLHL2O95198 593 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ANXA5P08758 320 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 CDH1P12830 882 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 RORAP35398 523 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 SLCO1A2P46721 670 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ITGA1P56199 1179 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 VSX2P58304 361 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ABATP80404 500 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 CATSPEREQ5SY80 951 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 PRAMEF9Q5VWM5 478 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 CAPN13Q6MZZ7 669 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 C6orf15Q6UXA7 325 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 THOC6Q86W42 341 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 TMEM126BQ8IUX1 230 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 TMEM151BQ8IW70 566 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 KLHDC8AQ8IYD2 350 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 NLGN4XQ8N0W4 816 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF655Q8N720 491 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF740Q8NDX6 193 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 NLGN4YQ8NFZ3 816 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 EXT2Q93063 718 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 OR2A5Q96R48 311 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 EGFL8Q99944 293 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 PCMTD2Q9NV79 361 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 WDR70Q9NW82 654 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 FETUBQ9UGM5 382 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 TBK1Q9UHD2 729 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 SLC22A14Q9Y267 594 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 IKBKGQ9Y6K9 419 aa13.61□□□□□ -0.23
SHKBP1-217ENST00000598558 LRRC14BA6NHZ5 514 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 H0YGG7 62 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 RRP8O43159 456 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 OR2B3O76000 313 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 STATHP02808 62 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 SBK3P0C264 359 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 EPORP19235 508 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 ITGAXP20702 1163 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 CNTFP26441 200 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 GGT5P36269 586 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 HSPA7P48741 367 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 AGTR2P50052 363 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 ARF3P61204 181 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 MEF2AQ02078 507 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 SDK2Q58EX2 2172 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 WASHC2DQ5SRD0 308 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF385CQ66K41 422 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 SH2D5Q6ZV89 423 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 FRA10AC1Q70Z53 315 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 C17orf64Q86WR6 236 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 TMEM151AQ8N4L1 468 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 PDPRQ8NCN5 879 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 STAG3L4Q8TBR4 150 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 EPS8L3Q8TE67 593 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 ATL1Q8WXF7 558 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 CAVIN3Q969G5 261 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 NEIL2Q969S2 332 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 TSNARE1Q96NA8 513 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 CPNE5Q9HCH3 593 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 ENAMQ9NRM1 1142 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 TMEM184CQ9NVA4 438 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 DHCR7Q9UBM7 475 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 IL17BQ9UHF5 180 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 RNF112Q9ULX5 631 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 SNX7Q9UNH6 387 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 PCDHB3Q9Y5E6 796 aa13.6□□□□□ -0.23
SHKBP1-217ENST00000598558 URB1O60287 2271 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 FEZF1A0PJY2 475 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 E7EQ34 232 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms