RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CLEC16AQ2KHT3 1053 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 MUM1Q2TAK8 710 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 ZNF658BQ4V348 819 aaPredicted RBP15.21■□□□□ 0.03
VPS53-218ENST00000575207 UBAP2Q5T6F2 1119 aaKnown RBP15.21■□□□□ 0.03
VPS53-218ENST00000575207 FAM151BQ6UXP7 276 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 CPEB2Q7Z5Q1 589 aaKnown RBP15.21■□□□□ 0.03
VPS53-218ENST00000575207 MEIOBQ8N635 442 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 STK33Q9BYT3 514 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 ADAM19Q9H013 955 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 DEFB127Q9H1M4 99 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 COG4Q9H9E3 785 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 MKKSQ9NPJ1 570 aaPredicted RBP15.21■□□□□ 0.03
VPS53-218ENST00000575207 GLYATL1P3A0A0U1RQE8 302 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 GAPDHSO14556 408 aaPredicted RBP15.2■□□□□ 0.02
VPS53-218ENST00000575207 PEX1O43933 1283 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 RNF8O76064 485 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 GFPT2O94808 682 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 UCHL3P15374 230 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 PDHA2P29803 388 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 SOX18P35713 384 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 PRLHRP49683 370 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 SRSF2Q01130 221 aaKnown RBP15.2■□□□□ 0.02
VPS53-218ENST00000575207 GALNT2Q10471 571 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 EXT1Q16394 746 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 ACKR1Q16570 336 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 C1orf185Q5T7R7 199 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 NT5DC3Q86UY8 548 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 AMER3Q8N944 861 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 METTL21AQ8WXB1 218 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 C10orf90Q96M02 699 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 DACH2Q96NX9 599 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 SMC6Q96SB8 1091 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 LUC7LQ9NQ29 371 aaKnown RBP15.2■□□□□ 0.02
VPS53-218ENST00000575207 CDC14AQ9UNH5 594 aa15.2■□□□□ 0.02
VPS53-218ENST00000575207 PRPF4O43172 522 aaKnown RBP eCLIP15.19■□□□□ 0.021e-8■■□□□ 11.6
VPS53-218ENST00000575207 BMP5P22003 454 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 CCNCP24863 283 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 SLC26A3P40879 764 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 ZC3H7AQ8IWR0 971 aaKnown RBP15.19■□□□□ 0.02
VPS53-218ENST00000575207 FMR1NBQ8N0W7 255 aaPredicted RBP15.19■□□□□ 0.02
VPS53-218ENST00000575207 OR5AR1Q8NGP9 310 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 MVB12AQ96EY5 273 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 TSGA13Q96PP4 275 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 YIPF2Q9BWQ6 316 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 TRIM7Q9C029 511 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 CDCP1Q9H5V8 836 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 ZDHHC11Q9H8X9 412 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 ZC3H7BQ9UGR2 993 aaKnown RBP15.19■□□□□ 0.02
VPS53-218ENST00000575207 CR1P17927 2039 aa15.19■□□□□ 0.02
VPS53-218ENST00000575207 RNF223E7ERA6 249 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 QSOX1O00391 747 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 CYC1P08574 325 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 ATP1A3P13637 1013 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 TRHRP34981 398 aaPredicted RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 PRKCIP41743 596 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 MTIF2P46199 727 aaKnown RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 ITGA8P53708 1063 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 RPA4Q13156 261 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 PKP1Q13835 747 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 POMZP3Q6PJE2 187 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 FIGLAQ6QHK4 219 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 LANCL3Q6ZV70 420 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 RPS19BP1Q86WX3 136 aaKnown RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 SGMS2Q8NHU3 365 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 CYTH2Q99418 400 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 INTS7Q9NVH2 962 aaKnown RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 STOX2Q9P2F5 926 aaPredicted RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 POLG2Q9UHN1 485 aa15.18■□□□□ 0.02
VPS53-218ENST00000575207 HOOK1Q9UJC3 728 aaKnown RBP15.18■□□□□ 0.02
VPS53-218ENST00000575207 A0A1B0GVC2 190 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 CTSVO60911 334 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 TPP2P29144 1249 aaPredicted RBP15.17■□□□□ 0.02
VPS53-218ENST00000575207 HLCSP50747 726 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 EMP3P54852 163 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 FRMPD2BQ6IN97 320 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 TBC1D21Q8IYX1 336 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 VN1R1Q9GZP7 353 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 ZNF629Q9UEG4 869 aaPredicted RBP15.17■□□□□ 0.02
VPS53-218ENST00000575207 C19orf25Q9UFG5 118 aaPredicted RBP15.17■□□□□ 0.02
VPS53-218ENST00000575207 VPS9D1Q9Y2B5 631 aa15.17■□□□□ 0.02
VPS53-218ENST00000575207 NDC80O14777 642 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 IGHG3P01860 377 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 NR1H2P55055 460 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 TAS2R50P59544 299 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 PCSK7Q16549 785 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 IFI16Q16666 785 aaKnown RBP15.16■□□□□ 0.02
VPS53-218ENST00000575207 MAN2A1Q16706 1144 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 C20orf204Q6ZNR8 217 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 SEM1Q6ZVN7 128 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 NAXEQ8NCW5 288 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 ZNF398Q8TD17 642 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 IGFBPL1Q8WX77 278 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 TRABDQ9H4I3 376 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS53-218ENST00000575207 EIF3LQ9Y262 564 aaKnown RBP15.16■□□□□ 0.02
VPS53-218ENST00000575207 ARHGAP21Q5T5U3 1957 aa15.16■□□□□ 0.02
VPS53-218ENST00000575207 TARM1B6A8C7 271 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 MFSD11O43934 449 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 GABRA1P14867 456 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 PRTGQ2VWP7 1150 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms