RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LCTLQ6UWM7 567 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 MCATQ8IVS2 390 aaKnown RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 LRRC56Q8IYG6 542 aaPredicted RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 TBC1D19Q8N5T2 526 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.46□□□□□ -0.41
CLK3-224ENST00000568605 STARD8Q92502 1023 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 ALKBH8Q96BT7 664 aaKnown RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 MRRFQ96E11 262 aaKnown RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 PAFAH2Q99487 392 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 PLCD4Q9BRC7 762 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 GPR87Q9BY21 358 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 NLNQ9BYT8 704 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 ATG10Q9H0Y0 220 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 SLC6A20Q9NP91 592 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 PADI2Q9Y2J8 665 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 A0A087X1B8 175 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 A0A0J9YVX5 310 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 MEN1O00255 615 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CDC7O00311 574 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 TXNDC9O14530 226 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 FAM155BO75949 473 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 IPO13O94829 963 aaKnown RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 WISP3O95389 354 aaPredicted RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 CD63P08962 238 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 TNFRSF8P28908 595 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 RORAP35398 523 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 MSH2P43246 934 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 PMS2P54278 862 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 RELAQ04206 551 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 NAE1Q13564 534 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CSHL1Q14406 222 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 FAM214AQ32MH5 1076 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CRTC2Q53ET0 693 aaPredicted RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 MROH9Q5TGP6 573 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 ZNF425Q6IV72 752 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 KLC3Q6P597 504 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 TMEM207Q6UWW9 146 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CMC1Q7Z7K0 106 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 PAQR7Q86WK9 346 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 ZNF655Q8N720 491 aaPredicted RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 OR56A3Q8NH54 315 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CT55Q8WUE5 264 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 ANKRD49Q8WVL7 239 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 SLC44A1Q8WWI5 657 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 RNF31Q96EP0 1072 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CRELD1Q96HD1 420 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CATSPER2Q96P56 530 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 UBL7Q96S82 380 aaPredicted RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 SGPP1Q9BX95 441 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 CNOT10Q9H9A5 744 aaKnown RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 NMRAL1Q9HBL8 299 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 PCMTD2Q9NV79 361 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 TMEM184CQ9NVA4 438 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 GPN3Q9UHW5 284 aaPredicted RBP12.45□□□□□ -0.42
CLK3-224ENST00000568605 TLK1Q9UKI8 766 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 ACOT9Q9Y305 439 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 DYRK1BQ9Y463 629 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 PCDHGA6Q9Y5G7 932 aa12.45□□□□□ -0.42
CLK3-224ENST00000568605 SCN2AQ99250 2005 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 A0A1B0GX78 115 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 CCDC189A1A4V9 331 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 H3BMH7 237 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 CTSVO60911 334 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 KATNA1O75449 491 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 KRT37O76014 449 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 ITGB2P05107 769 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 LTA4HP09960 611 aaKnown RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 SLC35E2BP0CK96 405 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 PIM1P11309 404 aaPredicted RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 CD1DP15813 335 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 VSX2P58304 361 aaPredicted RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 RPS15AP62244 130 aaKnown RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 SRSF6Q13247 344 aaKnown RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 BMPR2Q13873 1038 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 TGFBIQ15582 683 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 CDKL4Q5MAI5 379 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 LGSNQ5TDP6 509 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 ZNF517Q6ZMY9 492 aaPredicted RBP12.44□□□□□ -0.42
CLK3-224ENST00000568605 SPNS2Q8IVW8 549 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 LRRN4CLQ8ND94 238 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 UBXN10Q96LJ8 280 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 TSNARE1Q96NA8 513 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 ZNF285Q96NJ3 590 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 DHRS4Q9BTZ2 278 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 SNX15Q9NRS6 342 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 WWOXQ9NZC7 414 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 NDOR1Q9UHB4 597 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 ZNF180Q9UJW8 692 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 RNF112Q9ULX5 631 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 LAMA5O15230 3695 aa12.44□□□□□ -0.42
CLK3-224ENST00000568605 CHD6Q8TD26 2715 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CFAP47Q6ZTR5 3102 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 IGKV1-8A0A0C4DH67 115 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 SYCE1LA8MT33 242 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 POC1B-GALNT4F8VUJ3 575 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 ERVH48-1M5A8F1 160 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 DSCR3O14972 297 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 PRPF4O43172 522 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLK3-224ENST00000568605 RIPK2O43353 540 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 HCRTR1O43613 425 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms