RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CDC23Q9UJX2 597 aa16.1■□□□□ 0.17
CLK3-210ENST00000563112 CDC14AQ9UNH5 594 aa16.1■□□□□ 0.17
CLK3-210ENST00000563112 H0YGG7 62 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 TXNDC9O14530 226 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 ALPPP05187 535 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 UMODP07911 640 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 MMP11P24347 488 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 IVDP26440 423 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 OR1D4P47884 311 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 EMP3P54852 163 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 MLLT10P55197 1068 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 ARL4CP56559 192 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 ARF3P61204 181 aaPredicted RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 YBX1P67809 324 aaKnown RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 OCA2Q04671 838 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 ADCK2Q7Z695 626 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 PAQR7Q86WK9 346 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 MYO1HQ8N1T3 1032 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 GALNT16Q8N428 558 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 METTL27Q8N6F8 245 aaPredicted RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 EFCAB3Q8N7B9 438 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 PPFIBP2Q8ND30 876 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 RERGQ96A58 199 aaPredicted RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 LRRC39Q96DD0 335 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 CERS2Q96G23 380 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 CABS1Q96KC9 395 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 NDNQ99608 321 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 SMAD5Q99717 465 aaKnown RBP16.09■□□□□ 0.17
CLK3-210ENST00000563112 MAU2Q9Y6X3 613 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 HECTD1Q9ULT8 2610 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 HEATR5BQ9P2D3 2071 aa16.09■□□□□ 0.17
CLK3-210ENST00000563112 PABPN1LA6NDY0 278 aaKnown RBP16.08■□□□□ 0.16
CLK3-210ENST00000563112 AGPSO00116 658 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 NDC80O14777 642 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 PRPF4O43172 522 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLK3-210ENST00000563112 NRP2O60462 931 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 AHSGP02765 367 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 C8GP07360 202 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 HIST1H2AGP0C0S8 130 aaPredicted RBP16.08■□□□□ 0.16
CLK3-210ENST00000563112 EZRP15311 586 aaKnown RBP16.08■□□□□ 0.16
CLK3-210ENST00000563112 HIST1H2ADP20671 130 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 HRH2P25021 359 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 ELK3P41970 407 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 FOXL2P58012 376 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 RELAQ04206 551 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 RAPSNQ13702 412 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 MYBPC3Q14896 1274 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 HIF1AQ16665 826 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 NADK2Q4G0N4 442 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 VWA5B1Q5TIE3 1220 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 ZNF425Q6IV72 752 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 COX15Q7KZN9 410 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 CNTN4Q8IWV2 1026 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 CSNK1A1LQ8N752 337 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 EEF1AKMT1Q8WVE0 214 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 MIB2Q96AX9 1013 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 CFAP36Q96G28 342 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 SNF8Q96H20 258 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 HIST1H2AHQ96KK5 128 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 CCDC138Q96M89 665 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 SPSB2Q99619 263 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 HIST1H2AJQ99878 128 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 H2AFJQ9BTM1 129 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 PCBD2Q9H0N5 130 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 SOX17Q9H6I2 414 aaPredicted RBP16.08■□□□□ 0.16
CLK3-210ENST00000563112 CCDC177Q9NQR7 707 aaPredicted RBP16.08■□□□□ 0.16
CLK3-210ENST00000563112 SEMA3GQ9NS98 782 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 CHMP2BQ9UQN3 213 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 PLAAQ9Y263 795 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 LRRK2Q5S007 2527 aa16.08■□□□□ 0.16
CLK3-210ENST00000563112 SLC16A5O15375 505 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 IPO13O94829 963 aaKnown RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 FBLP22087 321 aaKnown RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 IMPA1P29218 277 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 ITGA8P53708 1063 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 SOX8P57073 446 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 SP140Q13342 867 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 RBBP7Q16576 425 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 PRTGQ2VWP7 1150 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 HP1BP3Q5SSJ5 553 aaPredicted RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 IRAK1BP1Q5VVH5 260 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 HIBCHQ6NVY1 386 aaPredicted RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 PAQR3Q6TCH7 311 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 GALNT7Q86SF2 657 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 IGDCC3Q8IVU1 814 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 MIEF2Q96C03 454 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 MVB12AQ96EY5 273 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 MFRPQ9BY79 579 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 PARVBQ9HBI1 364 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 SLAMF7Q9NQ25 335 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 CTSFQ9UBX1 484 aa16.07■□□□□ 0.16
CLK3-210ENST00000563112 ZNF282Q9UDV7 671 aaPredicted RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 CORO1CQ9ULV4 474 aaPredicted RBP16.07■□□□□ 0.16
CLK3-210ENST00000563112 IGKV1-8A0A0C4DH67 115 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 VSTM2BA6NLU5 285 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TTI1O43156 1089 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 ITGA3P26006 1051 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 GABRB3P28472 473 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 IL2P60568 153 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms