RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TMEM259Q4ZIN3 620 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 KIAA0895LQ68EN5 471 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 LCN8Q6JVE9 175 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 HID1Q8IV36 788 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 LIX1Q8N485 282 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 ICA1LQ8NDH6 482 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 DNAJB14Q8TBM8 379 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 GAB3Q8WWW8 586 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 ACPTQ9BZG2 426 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 ACTR3BQ9P1U1 418 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 GPR34Q9UPC5 381 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 TMED5Q9Y3A6 229 aa17.23■□□□□ 0.35
SNX1-208ENST00000559844 DNAJA2O60884 412 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 LILRB5O75023 590 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 IL6P05231 212 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 ACPPP15309 386 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 MRPS35P82673 323 aaKnown RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 SGCGQ13326 291 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 BLMHQ13867 455 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 INPP5AQ14642 412 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 KIAA0040Q15053 153 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 SFT2D3Q587I9 215 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 SLC2A7Q6PXP3 512 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 AGTRAPQ6RW13 159 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 THOC6Q86W42 341 aaKnown RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 TRAPPC5Q8IUR0 188 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 BIRC7Q96CA5 298 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 MTFMTQ96DP5 389 aaKnown RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 BTBD9Q96Q07 612 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 NR1H4Q96RI1 486 aaPredicted RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 PKP2Q99959 881 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 OR2AG1Q9H205 316 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 ALG2Q9H553 416 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 STOX2Q9P2F5 926 aaPredicted RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 IRF8Q02556 426 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 PCDH1Q08174 1060 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 PWP1Q13610 501 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 FGL2Q14314 439 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 FRG2Q64ET8 278 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 NANOGP8Q6NSW7 305 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 CYP2R1Q6VVX0 501 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 TMEFF1Q8IYR6 380 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 SNX19Q92543 992 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 FRG2BQ96QU4 278 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 KCTD14Q9BQ13 255 aaPredicted RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 C1QTNF2Q9BXJ5 285 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 SLC17A9Q9BYT1 436 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 NANOGQ9H9S0 305 aa17.22■□□□□ 0.35
SNX1-208ENST00000559844 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.22■□□□□ 0.35
SNX1-208ENST00000559844 K7ESM1 405 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 CLGNO14967 610 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 HRO43593 1189 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 KCNH1O95259 989 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 PAK4O96013 591 aaPredicted RBP17.21■□□□□ 0.35
SNX1-208ENST00000559844 CAPNS1P04632 268 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 IGHV4-34P06331 123 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 BDKRB1P46663 353 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 GSK3BP49841 420 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 CCR5P51681 352 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 LIPEQ05469 1076 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 AASDHQ4L235 1098 aaPredicted RBP17.21■□□□□ 0.35
SNX1-208ENST00000559844 PTRH1Q86Y79 214 aaKnown RBP17.21■□□□□ 0.35
SNX1-208ENST00000559844 CFAP206Q8IYR0 622 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 LILRA2Q8N149 483 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 LILRA3Q8N6C8 439 aaPredicted RBP17.21■□□□□ 0.35
SNX1-208ENST00000559844 ZBTB44Q8NCP5 570 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 CADM4Q8NFZ8 388 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 OR56A3Q8NH54 315 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 SLC13A3Q8WWT9 602 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 HIC2Q96JB3 615 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 PKP4Q99569 1192 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 PCED1AQ9H1Q7 454 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 VCXQ9H320 206 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 ATXN10Q9UBB4 475 aa17.21■□□□□ 0.35
SNX1-208ENST00000559844 C10orf142B7Z368 130 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 SLC31A1O15431 190 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 LATO43561 262 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 UQCRBP14927 111 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 ATP6V1B2P21281 511 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 HNF4AP41235 474 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 GRIA3P42263 894 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 AQP4P55087 323 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 CSTF3Q12996 717 aaKnown RBP17.2■□□□□ 0.34
SNX1-208ENST00000559844 NAE1Q13564 534 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 XKR6Q5GH73 641 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 ADAMTSL4Q6UY14 1074 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 DLEU7Q6UYE1 221 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 TRIM74Q86UV6 250 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 KIAA2013Q8IYS2 634 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 TMEM102Q8N9M5 508 aaPredicted RBP17.2■□□□□ 0.34
SNX1-208ENST00000559844 DNAJB8Q8NHS0 232 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 HM13Q8TCT9 377 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 HSPA12BQ96MM6 686 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 CLMPQ9H6B4 373 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 INTS7Q9NVH2 962 aaKnown RBP17.2■□□□□ 0.34
SNX1-208ENST00000559844 ARMC1Q9NVT9 282 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 GPRC5BQ9NZH0 403 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 PCDHGA2Q9Y5H1 932 aa17.2■□□□□ 0.34
SNX1-208ENST00000559844 SNX13Q9Y5W8 968 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms