RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 NAGAP17050 411 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 PTGER4P35408 488 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 NT5C2P49902 561 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 BLKP51451 505 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 VAMP2P63027 116 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 EFNB1P98172 346 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 MBTD1Q05BQ5 628 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 FAM27E3Q08E93 113 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 NCBP1Q09161 790 aaKnown RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 FUT11Q495W5 492 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 GLRA4Q5JXX5 417 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 CREBRFQ8IUR6 639 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 OR14A16Q8NHC5 309 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 PSPC1Q8WXF1 523 aaKnown RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 TMEM143Q96AN5 459 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 BIRC7Q96CA5 298 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 PHF21BQ96EK2 531 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 JPH2Q9BR39 696 aaPredicted RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 ZNF577Q9BSK1 485 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 RNF41Q9H4P4 317 aaPredicted RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 TMEM206Q9H813 350 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 SH3GLB2Q9NR46 395 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 SNTG1Q9NSN8 517 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 SPATS2LQ9NUQ6 558 aaKnown RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 NKIRAS2Q9NYR9 191 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 SEPT10Q9P0V9 454 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 CTNNAL1Q9UBT7 734 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 SLC25A10Q9UBX3 287 aaPredicted RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 TP53TG5Q9Y2B4 290 aa5.66□□□□□ -1.5
RTF1-204ENST00000558117 COL27A1Q8IZC6 1860 aaPredicted RBP5.66□□□□□ -1.5
RTF1-204ENST00000558117 CROCCQ5TZA2 2017 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 DIDO1Q9BTC0 2240 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 BICDL2A1A5D9 508 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 KDM4EB2RXH2 506 aaPredicted RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 WASH3PC4AMC7 463 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 EBAG9O00559 213 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 ITM2AO43736 263 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 SRD5A1P18405 259 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 CALRP27797 417 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 ACSL1P33121 698 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 CSTF2P33240 577 aaKnown RBP eCLIP5.65□□□□□ -1.5
RTF1-204ENST00000558117 ARRB1P49407 418 aaPredicted RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 NUDT6P53370 316 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 RPP30P78346 268 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 TRAF2Q12933 501 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 CTTNQ14247 550 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 VEPH1Q14D04 833 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 ASIC2Q16515 512 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 KLHL22Q53GT1 634 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 ANO5Q75V66 913 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 APPL2Q8NEU8 664 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 MRPS31Q92665 395 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 TREX2Q9BQ50 279 aaPredicted RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 NUDT16L1Q9BRJ7 211 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 ABCG4Q9H172 646 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 CDT1Q9H211 546 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 CLK4Q9HAZ1 481 aaKnown RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 BEX4Q9NWD9 120 aaPredicted RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 GCNT4Q9P109 453 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 RPH3AQ9Y2J0 694 aaPredicted RBP5.65□□□□□ -1.5
RTF1-204ENST00000558117 U3KQA8 63 aa5.65□□□□□ -1.5
RTF1-204ENST00000558117 PRRC2AP48634 2157 aaKnown RBP5.65□□□□□ -1.51
RTF1-204ENST00000558117 TP53BP1Q12888 1972 aaPredicted RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 A0A1W2PR77 199 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 TYW5A2RUC4 315 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 PRSS44E7EML9 344 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 IFNL4K9M1U5 179 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 GRID2O43424 1007 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 JAK2O60674 1132 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 ATP2C2O75185 946 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 SLC2A4P14672 509 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 ITGA3P26006 1051 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 LEPRP48357 1165 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 TUFMP49411 452 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 EFNA5P52803 228 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 PDX1P52945 283 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 NR1H2P55055 460 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 CLDN2P57739 230 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 DCAF7P61962 342 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 YWHAZP63104 245 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 TAF11Q15544 211 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 GPR68Q15743 365 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 PLA2G4FQ68DD2 849 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 PATL1Q86TB9 770 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 TADA2BQ86TJ2 420 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 GPAT4Q86UL3 456 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 FJX1Q86VR8 437 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 ZFAND4Q86XD8 727 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 TGIF2LYQ8IUE0 185 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 DENND6AQ8IWF6 608 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 SLC25A45Q8N413 288 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 MAPK15Q8TD08 544 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 SIPA1Q96FS4 1042 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 CATSPER2Q96P56 530 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 AP1M1Q9BXS5 423 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 KRTAP1-5Q9BYS1 174 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 TM6SF1Q9BZW5 370 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 DHX33Q9H6R0 707 aaKnown RBP5.64□□□□□ -1.51
RTF1-204ENST00000558117 ERVMER34-1Q9H9K5 563 aa5.64□□□□□ -1.51
RTF1-204ENST00000558117 GDF3Q9NR23 364 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms