RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 OXSMQ9NWU1 459 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 NUDT4Q9NZJ9 180 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 CPSF2Q9P2I0 782 aaKnown RBP4.88□□□□□ -1.63
VTI1B-202ENST00000553619 GALPQ9UBC7 116 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 POLG2Q9UHN1 485 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 EIF2B4Q9UI10 523 aaKnown RBP4.88□□□□□ -1.63
VTI1B-202ENST00000553619 LNPEPQ9UIQ6 1025 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 STK38LQ9Y2H1 464 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 MED16Q9Y2X0 877 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.88□□□□□ -1.63
VTI1B-202ENST00000553619 ZNF451Q9Y4E5 1061 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 OARD1Q9Y530 152 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 OR1A2Q9Y585 309 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 ANGPTL3Q9Y5C1 460 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 DGKBQ9Y6T7 804 aa4.88□□□□□ -1.63
VTI1B-202ENST00000553619 SPTY2D1-AS1A0A0U1RR47 76 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 A0A1B0GTW7 788 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 NEMP2A6NFY4 417 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TCP11X1B4DZS4 312 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TARM1B6A8C7 271 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 C10orf142B7Z368 130 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TLR4O00206 839 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CDC7O00311 574 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 FFAR2O15552 330 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SGTAO43765 313 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 KLK8O60259 260 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 DLX3O60479 287 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 KATNA1O75449 491 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PSIP1O75475 530 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 STK16O75716 305 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SUPT7LO94864 414 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TGDSO95455 350 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 MATN4O95460 622 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 HSPA4LO95757 839 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 MLYCDO95822 493 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 F7P08709 466 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SLC35G4P0C7Q5 338 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TROVE2P10155 538 aaKnown RBP eCLIP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CCND1P24385 295 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PBLDP30039 288 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 AVPR2P30518 371 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GNPDA1P46926 289 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SLC1A6P48664 564 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PIK3CGP48736 1102 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PXNP49023 591 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 FNTBP49356 437 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 DHPSP49366 369 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 HK3P52790 923 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GYS2P54840 703 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CLDN2P57739 230 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ABCE1P61221 599 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 HNRNPKP61978 463 aaKnown RBP eCLIP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 NFKB2Q00653 900 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GABPB1Q06547 395 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ILF3Q12906 894 aaKnown RBP eCLIP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PRKAA1Q13131 559 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ARHGAP19Q14CB8 494 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PCLAFQ15004 111 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PCBP2Q15366 365 aaKnown RBP eCLIP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ELOCQ15369 112 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TSNQ15631 228 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PFKFB4Q16877 469 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 UAP1L1Q3KQV9 507 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 KHDC1Q4VXA5 237 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TMEM31Q5JXX7 168 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 LYSMD4Q5XG99 296 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GCNT7Q6ZNI0 430 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 EFL1Q7Z2Z2 1120 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 RD3Q7Z3Z2 195 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PIWIL4Q7Z3Z4 852 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TRIM74Q86UV6 250 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PIM3Q86V86 326 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GKN2Q86XP6 184 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 C10orf107Q8IVU9 208 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PELI3Q8N2H9 469 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SPATA6LQ8N4H0 392 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CHCHD4Q8N4Q1 142 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CCNYL1Q8N7R7 359 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TMEM145Q8NBT3 493 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TMEM52Q8NDY8 209 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CFAP61Q8NHU2 1237 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 CEP76Q8TAP6 659 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 GAB3Q8WWW8 586 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 TFGQ92734 400 aaPredicted RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ATP6V1E2Q96A05 226 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 FAM136AQ96C01 138 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PHF21BQ96EK2 531 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 L3HYPDHQ96EM0 354 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 FAR2Q96K12 515 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 C7orf26Q96N11 449 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ATOH8Q96SQ7 321 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 PRRX2Q99811 253 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 MYOCQ99972 504 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SIKE1Q9BRV8 207 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 DRC3Q9H069 523 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 STN1Q9H668 368 aaKnown RBP4.87□□□□□ -1.63
VTI1B-202ENST00000553619 MVB12BQ9H7P6 319 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 COG4Q9H9E3 785 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 MLXIPLQ9NP71 852 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 FZD3Q9NPG1 666 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms