RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TM9SF3Q9HD45 589 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 TLR8Q9NR97 1041 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 AASDHPPTQ9NRN7 309 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OLA1Q9NTK5 396 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ASIC5Q9NY37 505 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 Q9Y3F1 56 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OARD1Q9Y530 152 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ANGPTL3Q9Y5C1 460 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHB9Q9Y5E1 797 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SCN8AQ9UQD0 1980 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ISPDA4D126 451 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CLDN24A6NM45 220 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TMEM229AB2RXF0 380 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PSMD11O00231 422 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 WNT9AO14904 365 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FZD6O60353 706 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 KCNK5O95279 499 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 IGHA2P01877 340 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 DNTTP04053 509 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 S100BP04271 92 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ADRA2AP08913 450 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ZDHHC11BP0C7U3 371 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 DBTP11182 482 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 S100A3P33764 101 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CLDN8P56748 225 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ZXDBP98169 803 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CACNG1Q06432 222 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ABHD18Q0P651 414 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TWF1Q12792 350 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FADDQ13158 208 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 MTA1Q13330 715 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 UBE2UQ5VVX9 321 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 KIAA1614Q5VZ46 1190 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 DESI1Q6ICB0 168 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ZCCHC8Q6NZY4 707 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 NCEH1Q6PIU2 408 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SPATC1Q76KD6 591 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CYP2U1Q7Z449 544 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TSEN54Q7Z6J9 526 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TSPYL5Q86VY4 417 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PTOV1Q86YD1 416 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PLD3Q8IV08 490 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CCDC103Q8IW40 242 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ZZZ3Q8IYH5 903 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 NLGN4XQ8N0W4 816 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 STK40Q8N2I9 435 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 POC5Q8NA72 575 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 OR6K2Q8NGY2 324 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TXNDC15Q96J42 360 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 HHIPQ96QV1 700 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 APOL4Q9BPW4 351 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 NTMT1Q9BV86 223 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CDADC1Q9BWV3 514 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FAM126AQ9BYI3 521 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 GPR62Q9BZJ7 368 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CCNB1IP1Q9NPC3 277 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 GKN1Q9NS71 199 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TRPS1Q9UHF7 1281 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 MBD1Q9UIS9 605 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 RNF6Q9Y252 685 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SAMHD1Q9Y3Z3 626 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHGA6Q9Y5G7 932 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 MTMR11A4FU01 709 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 AGAP5A6NIR3 686 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 A8MX80 341 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 K7ERQ8 282 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SCN2BO60939 215 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 RFPL2O75678 378 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 WDR47O94967 919 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CCNDBP1O95273 360 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PRAMEF1O95521 474 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 EBLN1P0CF75 366 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FPR1P21462 350 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 MZF1P28698 734 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SERPINB1P30740 379 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 DNAJA1P31689 397 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 GKP32189 559 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 KDELR2P33947 212 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 MAGEA11P43364 429 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 HNRNPFP52597 415 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 NUDT6P53370 316 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CDH4P55283 916 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 WNT3P56703 355 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TUBA1BP68363 451 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SEMG2Q02383 582 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 NPRL3Q12980 569 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 DUSP4Q13115 394 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 SF1Q15637 639 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF404Q494X3 552 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CTXN3Q4LDR2 81 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 GPRC6AQ5T6X5 926 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 C9orf131Q5VYM1 1079 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 RNF219Q5W0B1 726 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 PDE12Q6L8Q7 609 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 CXorf57Q6NSI4 855 aaKnown RBP5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FAHD1Q6P587 224 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TUBA3EQ6PEY2 450 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 TUBA1AQ71U36 451 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 GPR155Q7Z3F1 870 aa5.26□□□□□ -1.57
LIMA1-212ENST00000552491 FAM124AQ86V42 546 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms