RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GPX2P18283 190 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TEAD1P28347 426 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ETV3P41162 512 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 HALP42357 657 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TMEM115Q12893 351 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 RPA4Q13156 261 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TOP3AQ13472 1001 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 VEZF1Q14119 521 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ELOAQ14241 798 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 RBM48Q5RL73 367 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 CCNYL2Q5T2Q4 361 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 CPZQ66K79 652 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 UNC5DQ6UXZ4 953 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 RBM44Q6ZP01 1051 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 RFLNAQ6ZTI6 216 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 PARS2Q7L3T8 475 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 HIPK1Q86Z02 1210 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ZDHHC13Q8IUH4 622 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 RASGEF1AQ8N9B8 481 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 OR10A6Q8NH74 314 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ZNF420Q8TAQ5 688 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 SETD7Q8WTS6 366 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 FAM162AQ96A26 154 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ZNF707Q96C28 371 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 NRBF2Q96F24 287 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 NTN4Q9HB63 628 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TRPV4Q9HBA0 871 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TIMMDC1Q9NPL8 285 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 PRKAG2Q9UGJ0 569 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 RPS6KA6Q9UK32 745 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 DLGAP4Q9Y2H0 992 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 PCDHB14Q9Y5E9 798 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 WNT6Q9Y6F9 365 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 DNMT3AQ9Y6K1 912 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 DNAH12Q6ZR08 3092 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 COL4A3Q01955 1670 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 C2orf16Q68DN1 1984 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 AREL1O15033 823 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 BNIP3LO60238 219 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 RFPL2O75678 378 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 DNAJB5O75953 348 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 THRBP10828 461 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 CDK4P11802 303 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 HOXD12P35452 270 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 GABARAPL2P60520 117 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 GK3PQ14409 553 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 PDGFRLQ15198 375 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 HNRNPA1L2Q32P51 320 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 ZBED5Q49AG3 693 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 PAGE2BQ5JRK9 111 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 SERPINA13PQ6UXR4 307 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 LPCAT2Q7L5N7 544 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 RALGPS2Q86X27 583 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 VPS37AQ8NEZ2 397 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 SKA2Q8WVK7 121 aaPredicted RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 SCAMP4Q969E2 229 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 GFM2Q969S9 779 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 UBE2E3Q969T4 207 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 GRIP2Q9C0E4 1043 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 CAAP1Q9H8G2 361 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TSR3Q9UJK0 312 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 WBP11Q9Y2W2 641 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 MRPS23Q9Y3D9 190 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 KCNE2Q9Y6J6 123 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 CEPT1Q9Y6K0 416 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 AK5Q9Y6K8 562 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 HSPE1-MOB4S4R3N1 261 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TCF20Q9UGU0 1960 aaKnown RBP9.56□□□□□ -0.88
SS18-205ENST00000542420 LINC01553A4QN01 128 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 RFXANKO14593 260 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 NPC1O15118 1278 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 MAGEB3O15480 346 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HNRNPCP07910 306 aaKnown RBP eCLIP9.55□□□□□ -0.88
SS18-205ENST00000542420 JUNBP17275 347 aaPredicted RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 CEBPBP17676 345 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HPCAL1P37235 193 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HLCSP50747 726 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 GTF2H3Q13889 308 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ELAVL3Q14576 367 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 PON2Q15165 354 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 XKR6Q5GH73 641 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 HABP4Q5JVS0 413 aaKnown RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 CAPN13Q6MZZ7 669 aaPredicted RBP9.55□□□□□ -0.88
SS18-205ENST00000542420 DSG4Q86SJ6 1040 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 LAS2Q8IYD9 372 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 KRTCAP2Q8N6L1 136 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 NATD1Q8N6N6 113 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 ARL10Q8N8L6 244 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 TTC16Q8NEE8 873 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 GAB3Q8WWW8 586 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 TMBIM1Q969X1 311 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 MTERF3Q96E29 417 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 APIPQ96GX9 242 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PYURFQ96I23 114 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 MPP4Q96JB8 637 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 VPS50Q96JG6 964 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 HBEGFQ99075 208 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 SGPP1Q9BX95 441 aa9.55□□□□□ -0.88
SS18-205ENST00000542420 PITHD1Q9GZP4 211 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms