RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CCDC77Q9BR77 488 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 H2AFJQ9BTM1 129 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 TRIM54Q9BYV2 358 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 TRIM55Q9BYV6 548 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 CAB39LQ9H9S4 337 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 ACTR10Q9NZ32 417 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 CIDEBQ9UHD4 219 aa9.76□□□□□ -0.85
VPS28-204ENST00000526054 ARGFXA6NJG6 315 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 ISM1B1AKI9 464 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 GFYI3L273 518 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 DYNC1I1O14576 645 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 PHGDHO43175 533 aaKnown RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 MAP3K7O43318 606 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 KRT38O76015 456 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 FKBP9O95302 570 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 ENO2P09104 434 aaPredicted RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 TPBGLP0DKB5 382 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 GP1BBP13224 206 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 CNTFP26441 200 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 CRABP2P29373 138 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 SERPINB8P50452 374 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 PGDP52209 483 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 KPNA2P52292 529 aaKnown RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 PGGT1BP53609 377 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 CHAF1BQ13112 559 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 GPS2Q13227 327 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 BMPR2Q13873 1038 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 NAA30Q147X3 362 aaPredicted RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 CCSMST1Q4G0I0 132 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 LGSNQ5TDP6 509 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 MROH9Q5TGP6 573 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 EMBQ6PCB8 327 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 SPESP1Q6UW49 350 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 CCDC91Q7Z6B0 441 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 ADAMTSL2Q86TH1 951 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 TAX1BP1Q86VP1 789 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 CEP97Q8IW35 865 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 EFCAB3Q8N7B9 438 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 OR8K5Q8NH50 307 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 HMGCLL1Q8TB92 370 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 UBLCP1Q8WVY7 318 aaPredicted RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 ZNF501Q96CX3 271 aaPredicted RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 PKP4Q99569 1192 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 MENTQ9BUN1 341 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 PARD6BQ9BYG5 372 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 AKIRIN1Q9H9L7 192 aaPredicted RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 FANCEQ9HB96 536 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 PARVBQ9HBI1 364 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 ACSS2Q9NR19 701 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 C1GALT1Q9NS00 363 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 ZNF180Q9UJW8 692 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 BTRCQ9Y297 605 aa9.75□□□□□ -0.85
VPS28-204ENST00000526054 UTP20O75691 2785 aaKnown RBP9.75□□□□□ -0.85
VPS28-204ENST00000526054 SPTAN1Q13813 2472 aaKnown RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 A0A087X1B8 175 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 A0A0J9YY10 115 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 TTLL8A6PVC2 850 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 VPS4BO75351 444 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 WISP3O95389 354 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 KLK3P07288 261 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 CCDC166P0CW27 439 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 ERGP11308 486 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 UGT2B7P16662 529 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 PRDX3P30048 256 aaKnown RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 PNLIPRP1P54315 467 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 AP1S2P56377 157 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 ATP6V0D1P61421 351 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SLC29A2Q14542 456 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 NAA25Q14CX7 972 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 CYP2A13Q16696 494 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SLC5A12Q1EHB4 618 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 FBXO38Q6PIJ6 1188 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 TMEM207Q6UWW9 146 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 FRA10AC1Q70Z53 315 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 CMC1Q7Z7K0 106 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 TBC1D1Q86TI0 1168 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 SPNS2Q8IVW8 549 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SYTL1Q8IYJ3 562 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 LINC01555Q8NAE3 123 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 DENND1AQ8TEH3 1009 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 AENQ8WTP8 325 aaKnown RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 SMPDL3AQ92484 453 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 CCDC138Q96M89 665 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 PPM1MQ96MI6 270 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 NRTNQ99748 197 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SLC25A23Q9BV35 468 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 PITPNM3Q9BZ71 974 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 DERL2Q9GZP9 239 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SNX15Q9NRS6 342 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 INTS7Q9NVH2 962 aaKnown RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 ARGLU1Q9NWB6 273 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 SPHK1Q9NYA1 384 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 CTNNAL1Q9UBT7 734 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 FETUBQ9UGM5 382 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 ADAMTS6Q9UKP5 1117 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 RAB21Q9UL25 225 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 VPS4AQ9UN37 437 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 SNX7Q9UNH6 387 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 NOVA2Q9UNW9 492 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms