RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TWIST1Q15672 202 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SMN1Q16637 294 aaKnown RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 CLPPQ16740 277 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 LETM2Q2VYF4 491 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 KCTD21Q4G0X4 260 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 DAB2IPQ5VWQ8 1189 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ZNF530Q6P9A1 599 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 AFTPHQ6ULP2 937 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PACS1Q6VY07 963 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CENPQQ7L2Z9 268 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 SHFQ7M4L6 423 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TAS2R42Q7RTR8 314 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ARID3BQ8IVW6 561 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 SCYL3Q8IZE3 742 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 BBS5Q8N3I7 341 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 NANOGP1Q8N7R0 232 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TC2NQ8N9U0 490 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 FAM184AQ8NB25 1140 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ZNF548Q8NEK5 533 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 OR13C2Q8NGS9 318 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 OR8K5Q8NH50 307 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ZNF671Q8TAW3 534 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 NSMCE1Q8WV22 266 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 BCL2L2Q92843 193 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 HDAC11Q96DB2 347 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 LINC00615Q96LM1 132 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 APOLD1Q96LR9 279 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SAMD8Q96LT4 415 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 LRFN5Q96NI6 719 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 GAD1Q99259 594 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PAFAH2Q99487 392 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PARK7Q99497 189 aaKnown RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 PKP2Q99959 881 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TUBA1CQ9BQE3 449 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CARD6Q9BX69 1037 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ZNF350Q9GZX5 532 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 XKR8Q9H6D3 395 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TMEM206Q9H813 350 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PLAC1Q9HBJ0 212 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 HPS4Q9NQG7 708 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 FAM114A2Q9NRY5 505 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ACSS1Q9NUB1 689 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.6□□□□□ -1.67
CD44-220ENST00000525688 UBAP1Q9NZ09 502 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ANKMY1Q9P2S6 941 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PLAGL1Q9UM63 463 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 DLGAP4Q9Y2H0 992 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 KDM6AO15550 1401 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 LOC102723996A0A087X1L8 192 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 LNP1A1A4G5 178 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 ZSCAN5BA6NJL1 495 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 ERVV-2B6SEH9 535 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 J3KR12 359 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 MAP2K7O14733 419 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 HSPA12AO43301 675 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 ITM2AO43736 263 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 LY75O60449 1722 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 FAM86B2P0C5J1 330 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 TMEM191BP0C7N4 346 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 DLATP10515 647 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 MMP9P14780 707 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 NAGAP17050 411 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 ABCG1P45844 678 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 OR1G1P47890 313 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 RFX5P48382 616 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 VCPP55072 806 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 PAPPAQ13219 1627 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 DDX39BQ13838 428 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 SGCBQ16585 318 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 MTHFSDQ2M296 383 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 FUT11Q495W5 492 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 C1orf185Q5T7R7 199 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 ATAD3BQ5T9A4 648 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 PXDC1Q5TGL8 231 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 OTUD1Q5VV17 481 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 TMEM198Q66K66 360 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 KLC3Q6P597 504 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 PSRC1Q6PGN9 363 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 PAPD4Q6PIY7 484 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 METAP1DQ6UB28 335 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 CTU1Q7Z7A3 348 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 VASH2Q86V25 355 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 WDR49Q8IV35 697 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 KLHL7Q8IXQ5 586 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 GRAPLQ8TC17 118 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 MIPOL1Q8TD10 442 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 CHURC1Q8WUH1 139 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 PTPMT1Q8WUK0 201 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 TEKT4Q8WW24 435 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 PIGBQ92521 554 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 DHX58Q96C10 678 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 C11orf24Q96F05 449 aaPredicted RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 EEF2KMTQ96G04 330 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 NUDCD1Q96RS6 583 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 SEMA3CQ99985 751 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 DDX50Q9BQ39 737 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 HAUS8Q9BT25 410 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 MMTAG2Q9BU76 263 aaKnown RBP4.59□□□□□ -1.67
CD44-220ENST00000525688 EDEM2Q9BV94 578 aa4.59□□□□□ -1.67
CD44-220ENST00000525688 CCSER1Q9C0I3 900 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms