RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CAMKMTQ7Z624 323 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 SNX32Q86XE0 403 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 LGI2Q8N0V4 545 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 NDUFAF2Q8N183 169 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 AVL9Q8NBF6 648 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 OR6S1Q8NH40 331 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 ATL1Q8WXF7 558 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 SLCO2A1Q92959 643 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 PANK2Q9BZ23 570 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 FAM49AQ9H0Q0 323 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 C19orf25Q9UFG5 118 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 GIMAP2Q9UG22 337 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 ISY1Q9ULR0 285 aaKnown RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 TOP2BQ02880 1626 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1B0GVY2 172 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1W2PPM1 405 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1W2PPQ1 181 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1W2PR80 420 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 KPNA7A9QM74 516 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 TRIM77I1YAP6 450 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 HOXC13P31276 330 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 PTGER4P35408 488 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 HUNKP57058 714 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 PHKG1Q16816 387 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 MCMDC2Q4G0Z9 681 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 UGT3A1Q6NUS8 523 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 CCDC3Q9BQI4 270 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 DCTN5Q9BTE1 182 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 NOL11Q9H8H0 719 aaKnown RBP4.79□□□□□ -1.64
SF3B1-212ENST00000496458 CNOT10Q9H9A5 744 aaKnown RBP4.79□□□□□ -1.64
SF3B1-212ENST00000496458 CHST11Q9NPF2 352 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 IL17BQ9UHF5 180 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 CPSF3Q9UKF6 684 aaKnown RBP4.79□□□□□ -1.64
SF3B1-212ENST00000496458 TRPV2Q9Y5S1 764 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 FAM169AQ9Y6X4 670 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 BIVM-ERCC5R4GMW8 1640 aa4.79□□□□□ -1.64
SF3B1-212ENST00000496458 EIF4G3O43432 1585 aaKnown RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 FPGTO14772 594 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 VTNP04004 478 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 DEKP35659 375 aaKnown RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 GSCP56915 257 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 GUCY2DQ02846 1103 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 KLC1Q07866 573 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 VEZF1Q14119 521 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 LETM2Q2VYF4 491 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 TAF1BQ53T94 588 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 TC2NQ8N9U0 490 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 MAPK15Q8TD08 544 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 GATAD1Q8WUU5 269 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 APOBEC4Q8WW27 367 aaKnown RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 ATP6V1E2Q96A05 226 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 MOB3AQ96BX8 217 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 OMA1Q96E52 524 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 ZNF300Q96RE9 604 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-212ENST00000496458 WWTR1Q9GZV5 400 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 TLE6Q9H808 572 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 NUDT4Q9NZJ9 180 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 ANAPC2Q9UJX6 822 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 MAN1B1Q9UKM7 699 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 WDR83OSQ9Y284 106 aa4.78□□□□□ -1.64
SF3B1-212ENST00000496458 GAPVD1Q14C86 1478 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 PI15O43692 258 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 IRF2P14316 349 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 PRKACGP22612 351 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 PSMA3P25788 255 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 CTNNA1P35221 906 aaKnown RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 CCR3P51677 355 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 IFI35P80217 286 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 WASHC5Q12768 1159 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 ITGA7Q13683 1181 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 PSMD6Q15008 389 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 ZNF74Q16587 644 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 MFSD4BQ5TF39 518 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 LYSMD4Q5XG99 296 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 PAQR6Q6TCH4 344 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 ENOSF1Q7L5Y1 443 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 SPEM1Q8N4L4 309 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 ZNF713Q8N859 430 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 OR4K1Q8NGD4 311 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 OR10Q1Q8NGQ4 319 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 AFAP1L1Q8TED9 768 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 VMP1Q96GC9 406 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 FAM71F1Q96KD3 344 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 C4orf45Q96LM5 186 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 NKX3-1Q99801 234 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 LRRC61Q9BV99 259 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 GPR88Q9GZN0 384 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 NFKBIL1Q9UBC1 381 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-212ENST00000496458 MOB4Q9Y3A3 225 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 R4GN57 208 aa4.77□□□□□ -1.65
SF3B1-212ENST00000496458 FANCIQ9NVI1 1328 aa4.76□□□□□ -1.65
SF3B1-212ENST00000496458 GTPBP10A4D1E9 387 aaKnown RBP4.76□□□□□ -1.65
SF3B1-212ENST00000496458 DKC1O60832 514 aaKnown RBP eCLIP4.76□□□□□ -1.65
SF3B1-212ENST00000496458 NR2F1P10589 423 aa4.76□□□□□ -1.65
SF3B1-212ENST00000496458 GATA1P15976 413 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-212ENST00000496458 CSNK2BP67870 215 aa4.76□□□□□ -1.65
SF3B1-212ENST00000496458 CYCSP99999 105 aaKnown RBP4.76□□□□□ -1.65
SF3B1-212ENST00000496458 CUL3Q13618 768 aa4.76□□□□□ -1.65
SF3B1-212ENST00000496458 SNTB1Q13884 538 aaKnown RBP4.76□□□□□ -1.65
SF3B1-212ENST00000496458 VWC2Q2TAL6 325 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms