RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 ATG16L1Q676U5 607 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 LCTLQ6UWM7 567 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 THOC6Q86W42 341 aaKnown RBP12.54□□□□□ -0.4
VPS33A-202ENST00000451053 KLHDC8AQ8IYD2 350 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 CARFQ8N187 725 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 TCAIMQ8N3R3 496 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 FBXO39Q8N4B4 442 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 C19orf47Q8N9M1 422 aaKnown RBP12.54□□□□□ -0.4
VPS33A-202ENST00000451053 LRRC8CQ8TDW0 803 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 UBTD2Q8WUN7 234 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 STRADBQ9C0K7 418 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 MRPS30Q9NP92 439 aaKnown RBP12.54□□□□□ -0.4
VPS33A-202ENST00000451053 CUEDC1Q9NWM3 386 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-202ENST00000451053 OXSMQ9NWU1 459 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 SOHLH2Q9NX45 425 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 ADAM21Q9UKJ8 722 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 LOXL2Q9Y4K0 774 aa12.54□□□□□ -0.4
VPS33A-202ENST00000451053 CCDC187A0A096LP49 1063 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 IGKV1-8A0A0C4DH67 115 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 WDR91A4D1P6 747 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 EFCAB7A8K855 629 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 A8MT66 165 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 KLF11O14901 512 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 CCNT2O60583 730 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 TRIM13O60858 407 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 IPO13O94829 963 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 WDR47O94967 919 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SNUPNO95149 360 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 CCNDBP1O95273 360 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 FKBP9O95302 570 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 ADRB1P08588 477 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 EBLN1P0CF75 366 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 CCL4P13236 92 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 HGFP14210 728 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 NPPBP16860 134 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 NELFEP18615 380 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 GRK2P25098 689 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 ALDH3A1P30838 453 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 CSTF2P33240 577 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 ARL4DP49703 201 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 ALDH18A1P54886 795 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SH3BP2P78314 561 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 HSD11B2P80365 405 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 PRDX1Q06830 199 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 FCRL6Q6DN72 434 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 FIGLAQ6QHK4 219 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 RGS9BPQ6ZS82 235 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 RAB11FIP2Q7L804 512 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 KMT5CQ86Y97 462 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 PTGR2Q8N8N7 351 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 AGBL5Q8NDL9 886 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 GRAMD1AQ96CP6 724 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 PHF21BQ96EK2 531 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 DPH7Q9BTV6 452 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SCNM1Q9BWG6 230 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 CD244Q9BZW8 370 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 PCBD2Q9H0N5 130 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 FAM60AQ9NP50 221 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 OCIAD1Q9NX40 245 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SIDT1Q9NXL6 827 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SLC22A14Q9Y267 594 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 BTRCQ9Y297 605 aa12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SNRNP200O75643 2136 aaKnown RBP12.53□□□□□ -0.4
VPS33A-202ENST00000451053 SRRM3A6NNA2 597 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-202ENST00000451053 STX16-NPEPL1H3BU86 382 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 STX16O14662 325 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 DLX3O60479 287 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 STK16O75716 305 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 SIX3O95343 332 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-202ENST00000451053 SERPINE1P05121 402 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 CDH1P12830 882 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 FOLR1P15328 257 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 ITIH1P19827 911 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 SERPINB5P36952 375 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 ETV5P41161 510 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 MLLT3P42568 568 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-202ENST00000451053 GNGT1P63211 74 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 ABATP80404 500 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 CAMK2BQ13554 666 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 CHI3L2Q15782 390 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 C3orf38Q5JPI3 329 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 FOXR1Q6PIV2 292 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 C17orf64Q86WR6 236 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 FAM129CQ86XR2 697 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 C10orf107Q8IVU9 208 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 D2HGDHQ8N465 521 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 BMPERQ8N8U9 685 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 SNX31Q8N9S9 440 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 NEIL2Q969S2 332 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 CMKLR1Q99788 373 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 HAUS8Q9BT25 410 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 MECRQ9BV79 373 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 MANSC1Q9H8J5 431 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 PDE7BQ9NP56 450 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 DNAJC11Q9NVH1 559 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 SATB2Q9UPW6 733 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 KLK4Q9Y5K2 254 aa12.52□□□□□ -0.41
VPS33A-202ENST00000451053 TNPO3Q9Y5L0 923 aaKnown RBP12.52□□□□□ -0.41
VPS33A-202ENST00000451053 MED19A0JLT2 244 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 OR2A25A4D2G3 310 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms