RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 WASHC5Q12768 1159 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 CBX3Q13185 183 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 ITGA7Q13683 1181 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 NR1D2Q14995 579 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 EFNB3Q15768 340 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 TPD52L1Q16890 204 aaPredicted RBP3.97□□□□□ -1.77
VPS29-202ENST00000447578 IZUMO4Q1ZYL8 232 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 C18orf63Q68DL7 685 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 CNSTQ6PJW8 725 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 PRSS57Q6UWY2 283 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 GSG1LQ6UXU4 331 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 DSG4Q86SJ6 1040 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 LRRC8AQ8IWT6 810 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 CNPY4Q8N129 248 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 AADATQ8N5Z0 425 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 PCDH20Q8N6Y1 951 aaKnown RBP3.97□□□□□ -1.77
VPS29-202ENST00000447578 TRIML1Q8N9V2 468 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 SLC38A9Q8NBW4 561 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 CNNM3Q8NE01 707 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 HMGCLL1Q8TB92 370 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 ESR2Q92731 530 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 TAAR8Q969N4 342 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 RHBDF1Q96CC6 855 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 PHF21BQ96EK2 531 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 FAM81BQ96LP2 452 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 APOLD1Q96LR9 279 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 BPIFA3Q9BQP9 254 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 INPP5KQ9BT40 448 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 SEZ6LQ9BYH1 1024 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 CATSPERBQ9H7T0 1116 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 TMEM206Q9H813 350 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 TBC1D17Q9HA65 648 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 PLAC1Q9HBJ0 212 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 DPP3Q9NY33 737 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 ERAP1Q9NZ08 941 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 TBC1D7Q9P0N9 293 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 IFNKQ9P0W0 207 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 POLLQ9UGP5 575 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 FBXL2Q9UKC9 423 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 ITGA11Q9UKX5 1188 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 PCDHGB1Q9Y5G3 927 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 RAI2Q9Y5P3 530 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 DOT1LQ8TEK3 1739 aa3.97□□□□□ -1.77
VPS29-202ENST00000447578 ITGB4P16144 1822 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 LAMA4Q16363 1823 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 HEPACAM2A8MVW5 462 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 FAM90A26D6RGX4 464 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 I6L893 689 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 SLC33A1O00400 549 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 CLDN4O14493 209 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 NEMFO60524 1076 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 MED24O75448 989 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 PRDM1O75626 825 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 DEXIO95424 95 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 PNPP00491 289 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 MMP1P03956 469 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 SKILP12757 684 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 NAGAP17050 411 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 ITGB8P26012 769 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 U2AF2P26368 475 aaKnown RBP eCLIP3.96□□□□□ -1.782e-6■■□□□ 11.9
VPS29-202ENST00000447578 RPL3P39023 403 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 FASLGP48023 281 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 KCNJ1P48048 391 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 TAS2R38P59533 333 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 ZP1P60852 638 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 STX1BP61266 288 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 HNRNPKP61978 463 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS29-202ENST00000447578 ROR2Q01974 943 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 CRYZQ08257 329 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 TRAF1Q13077 416 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 RPA4Q13156 261 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 PNOCQ13519 176 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 CTTNQ14247 550 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 GPR18Q14330 331 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 CTF1Q16619 201 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 TAZQ16635 292 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 ZNF284Q2VY69 593 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 PPP6R3Q5H9R7 873 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 RESP18Q5W5W9 173 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 RAB12Q6IQ22 244 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 TMEM270Q6UE05 265 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 OLFM4Q6UX06 510 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 C15orf39Q6ZRI6 1047 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 TLK2Q86UE8 772 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 GPR180Q86V85 440 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 NBPF5PQ86XG9 351 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 NRROSQ86YC3 692 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 FAM219AQ8IW50 185 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 SLC5A8Q8N695 610 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 GCSAMQ8N6F7 178 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 OCC1Q8TAD7 63 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 C9orf43Q8TAL5 461 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 BBS10Q8TAM1 723 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 DNASE1L2Q92874 299 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 SPDL1Q96EA4 605 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 C16orf45Q96MC5 204 aaPredicted RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 SFXN2Q96NB2 322 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 FEVQ99581 238 aa3.96□□□□□ -1.78
VPS29-202ENST00000447578 RIOK1Q9BRS2 568 aaKnown RBP3.96□□□□□ -1.78
VPS29-202ENST00000447578 C16orf70Q9BSU1 422 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms