RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GATA5Q9BWX5 397 aaPredicted RBP15.19■□□□□ 0.02
USP40-206ENST00000443711 IPPKQ9H8X2 491 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 TMEM184CQ9NVA4 438 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 ANKMY1Q9P2S6 941 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 IGHV5-51A0A0C4DH38 117 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 SLC9B1P1A6NJY1 282 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 A8MU76 341 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 H2AFYO75367 372 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 ZBTB11O95625 1053 aaPredicted RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 MT-CO3P00414 261 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ANKRD34CP0C6C1 535 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 C1GALT1C1LP0DN25 315 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 THRAP10827 490 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 CDH1P12830 882 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 PVRP15151 417 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 CHN1P15882 459 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ST6GAL1P15907 406 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 MAGP20916 626 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ARL4DP49703 201 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 YBX1P67809 324 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 ZFP36L1Q07352 338 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 PCDH1Q08174 1060 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 PHF19Q5T6S3 580 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 NXPE4Q6UWF7 544 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 SLCO4C1Q6ZQN7 724 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ARHGAP22Q7Z5H3 698 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 TRIM42Q8IWZ5 723 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ABHD11Q8NFV4 315 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 KLHL6Q8WZ60 621 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 ATP6V1E2Q96A05 226 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 CCDC74BQ96LY2 380 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 NSUN5Q96P11 429 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 NOL11Q9H8H0 719 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 PELI2Q9HAT8 420 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 SLC6A20Q9NP91 592 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 INTS9Q9NV88 658 aaKnown RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 CUEDC1Q9NWM3 386 aaPredicted RBP15.18■□□□□ 0.02
USP40-206ENST00000443711 DLL3Q9NYJ7 618 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 SH2B3Q9UQQ2 575 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 STK38LQ9Y2H1 464 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 KLHL20Q9Y2M5 609 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 KLK4Q9Y5K2 254 aa15.18■□□□□ 0.02
USP40-206ENST00000443711 DCDC2BA2VCK2 349 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 E7EQ34 232 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 H7BY64 318 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 NPHS1O60500 1241 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 MLYCDO95822 493 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 FGF3P11487 239 aaPredicted RBP15.17■□□□□ 0.02
USP40-206ENST00000443711 EPORP19235 508 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 SEPHS1P49903 392 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 CCR8P51685 355 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 INHBCP55103 352 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 CDH13P55290 713 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 IRF8Q02556 426 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 RBBP7Q16576 425 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 XKR6Q5GH73 641 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 CATSPEREQ5SY80 951 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 ATG9BQ674R7 924 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 FCRL6Q6DN72 434 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 ZNF425Q6IV72 752 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 RPS27LQ71UM5 84 aaKnown RBP15.17■□□□□ 0.02
USP40-206ENST00000443711 ADCK2Q7Z695 626 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 TMPRSS11BQ86T26 416 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 C19orf47Q8N9M1 422 aaKnown RBP15.17■□□□□ 0.02
USP40-206ENST00000443711 TRPC4APQ8TEL6 797 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 TCTN2Q96GX1 697 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 CNDP1Q96KN2 507 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 PRAP1Q96NZ9 151 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 DEPDC7Q96QD5 511 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 PLCD4Q9BRC7 762 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 NTMT1Q9BV86 223 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 KLHL25Q9H0H3 589 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 EHD1Q9H4M9 534 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 GSTO2Q9H4Y5 243 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 ZNF768Q9H5H4 540 aaKnown RBP15.17■□□□□ 0.02
USP40-206ENST00000443711 ZBTB26Q9HCK0 441 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 SEMA4BQ9NPR2 832 aaPredicted RBP15.17■□□□□ 0.02
USP40-206ENST00000443711 ACSS2Q9NR19 701 aa15.17■□□□□ 0.02
USP40-206ENST00000443711 COL27A1Q8IZC6 1860 aaPredicted RBP15.16■□□□□ 0.02
USP40-206ENST00000443711 KNTC1P50748 2209 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 IGKV1-8A0A0C4DH67 115 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 OR2A25A4D2G3 310 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 OR7A17O14581 309 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 OTCP00480 354 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 SERPINE1P05121 402 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CXCR2P25025 360 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 GRK2P25098 689 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CCKBRP32239 447 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 GRK3P35626 688 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 SERPINB5P36952 375 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CASP2P42575 452 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CCNG1P51959 295 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CSNK1G2P78368 415 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 HSD11B2P80365 405 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CHIT1Q13231 466 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 LAPTM5Q13571 262 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 DOC2AQ14183 400 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 CHI3L2Q15782 390 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 TBCCQ15814 346 aa15.16■□□□□ 0.02
USP40-206ENST00000443711 ISXQ2M1V0 245 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms