RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 WDR83Q9BRX9 315 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NOL11Q9H8H0 719 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 XPNPEP1Q9NQW7 623 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 RCOR3Q9P2K3 495 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SNX24Q9Y343 169 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 TLCD2A6NGC4 264 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GSC2O15499 205 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DLGAP3O95886 979 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 S1PR4O95977 384 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ATP1B2P14415 290 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC6A4P31645 630 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MLLT6P55198 1093 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 RPS15AP62244 130 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MALLQ13021 153 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 IL18R1Q13478 541 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 FGFBP1Q14512 234 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NR1D2Q14995 579 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 C9orf152Q5JTZ5 239 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DNM1P34Q6PK57 102 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 METTL25Q8N6Q8 603 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NUDT8Q8WV74 236 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 RGMAQ96B86 450 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MTFMTQ96DP5 389 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GBA3Q9H227 469 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NUDT19A8MXV4 375 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MTX2O75431 263 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 AP2A2O94973 939 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 LY86O95711 162 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 COMTP21964 271 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PON1P27169 355 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GSTT1P30711 240 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SNCBQ16143 134 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PTPN20Q4JDL3 420 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SCARA3Q6AZY7 606 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SYT10Q6XYQ8 523 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF621Q6ZSS3 439 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GHDCQ8N2G8 530 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 TRAM1L1Q8N609 369 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 OR2I1PQ8NGU4 316 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 MRGPRX1Q96LB2 322 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF607Q96SK3 696 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC6A20Q9NP91 592 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PRSS16Q9NQE7 514 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GRID1Q9ULK0 1009 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 AHCTF1Q8WYP5 2266 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DSCR3O14972 297 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SCO2O43819 266 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 PRAMEF12O95522 483 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 DNAJA1P31689 397 aaKnown RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC6A9P48067 706 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 FAPQ12884 760 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 INO80DQ53TQ3 878 aaPredicted RBP8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SPOCD1Q6ZMY3 1216 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 JAZF1Q86VZ6 243 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 SLC26A11Q86WA9 606 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 RELL1Q8IUW5 271 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 GPER1Q99527 375 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF670Q9BS34 389 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 NOD2Q9HC29 1040 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 AMACRQ9UHK6 382 aa8.16□□□□□ -1.1
HMGB1-203ENST00000341423 TRPC5OSA6NMA1 111 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 CDX4O14627 284 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ASNA1O43681 348 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 CACNG3O60359 315 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 TMEM63AO94886 807 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 SEC24AO95486 1093 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 SNRPAP09012 282 aaKnown RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ATXN1LP0C7T5 689 aaKnown RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ACSL1P33121 698 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 LSSP48449 732 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 KLC1Q07866 573 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 PDCD2Q16342 344 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 DEFB110Q30KQ9 67 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 CYP27C1Q4G0S4 372 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 RPS19BP1Q86WX3 136 aaKnown RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 RELTQ969Z4 430 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 TCTN2Q96GX1 697 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 KCTD15Q96SI1 283 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 DPH2Q9BQC3 489 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 SLITRK2Q9H156 845 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 WSB2Q9NYS7 404 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 IQCF5A8MTL0 148 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 TISP43B9A030 160 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 SLC12A3P55017 1021 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 RAB8AP61006 207 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 IL20RBQ6UXL0 311 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 GPAT4Q86UL3 456 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF227Q86WZ6 799 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 SFRP1Q8N474 314 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 RCBTB1Q8NDN9 531 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 USP6NLQ92738 828 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 FAM120BQ96EK7 910 aaKnown RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ZFYVE21Q9BQ24 234 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 NPLQ9BXD5 320 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-203ENST00000341423 XKR8Q9H6D3 395 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 CUTCQ9NTM9 273 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 ZMIZ1Q9ULJ6 1067 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 CA5BQ9Y2D0 317 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 PCDHGA11Q9Y5H2 935 aa8.15□□□□□ -1.1
HMGB1-203ENST00000341423 N4BP2Q86UW6 1770 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms