RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FBXW11Q9UKB1 542 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MAB21L2Q9Y586 359 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 USP3Q9Y6I4 520 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 EI24O14681 340 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GATBO75879 557 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 RHOQP17081 205 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 RPS3P23396 243 aaKnown RBP eCLIP6.26□□□□□ -1.412e-6■■■□□ 17.7
VPS35-201ENST00000299138 HOXC13P31276 330 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 AFF3P51826 1226 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 POLR2JP52435 117 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 STARD3Q14849 445 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TBCEQ15813 527 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 MARC1Q5VT66 337 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 FAM122CQ6P4D5 195 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 DOK6Q6PKX4 331 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ARSKQ6UWY0 536 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 LARP4Q71RC2 724 aaKnown RBP eCLIP6.26□□□□□ -1.412e-7■□□□□ 9
VPS35-201ENST00000299138 PIGZQ86VD9 579 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SLC22A16Q86VW1 577 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TSPYL5Q86VY4 417 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 PTGR2Q8N8N7 351 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 TRPM4Q8TD43 1214 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TSEN15Q8WW01 171 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 MUL1Q969V5 352 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 HSPA12BQ96MM6 686 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CORO1BQ9BR76 489 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MTRRQ9UBK8 725 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TRPV2Q9Y5S1 764 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 U3KQV3 271 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TARM1B6A8C7 271 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MCIDASD6RGH6 385 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NDST3O95803 873 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ESR1P03372 595 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 CYP11A1P05108 521 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 INHBBP09529 407 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ITGB6P18564 788 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RAB3BP20337 219 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NUDT1P36639 197 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PRKAG1P54619 331 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COTL1Q14019 142 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 DLG2Q15700 870 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PARP15Q460N3 678 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COLEC12Q5KU26 742 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 IDNKQ5T6J7 187 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KANK2Q63ZY3 851 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZNF550Q7Z398 422 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 FAM131BQ86XD5 332 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 METTL4Q8N3J2 472 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 LNX2Q8N448 690 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 CDYL2Q8N8U2 506 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 OR14K1Q8NGZ2 314 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NPLOC4Q8TAT6 608 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 UBA3Q8TBC4 463 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 DNAJB14Q8TBM8 379 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KLHL6Q8WZ60 621 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 EMID1Q96A84 441 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 SH3YL1Q96HL8 342 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZBED3Q96IU2 234 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 PEBP4Q96S96 227 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PLCXD1Q9NUJ7 323 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 DDIT4Q9NX09 232 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 UBP1Q9NZI7 540 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KCNH4Q9UQ05 1017 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ASB4Q9Y574 426 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 DCDC2BA2VCK2 349 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 WNT10BO00744 389 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGA12O60330 932 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 TIPRLO75663 272 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KRT33AO76009 404 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 LRIG2O94898 1065 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 TXNDC12O95881 172 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RHOP08100 348 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 CHRM5P08912 532 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 CSRP3P50461 194 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PRKCZQ05513 592 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 UGT8Q16880 541 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZDHHC20Q5W0Z9 365 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZNF782Q6ZMW2 699 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 SSX9Q7RTT3 188 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 DPP9Q86TI2 863 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZNF598Q86UK7 904 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 SUN3Q8TAQ9 357 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 THAP6Q8TBB0 222 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 TRIB2Q92519 343 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MARVELD3Q96A59 401 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZBTB45Q96K62 511 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 C1orf74Q96LT6 269 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZYG11BQ9C0D3 744 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GPATCH2LQ9NWQ4 482 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 QSOX1O00391 747 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ANGPTL1O95841 491 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 FCER2P06734 321 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NR2F6P10588 404 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GOT1P17174 413 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZNF81P51508 661 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ERVK-25P63136 954 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 CRADDP78560 199 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MS4A2Q01362 244 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NFE2L1Q14494 772 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms