RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZNF557Q8N988 423 aaPredicted RBP19.43■□□□□ 0.7
VPS53-201ENST00000291074 DNAJB8Q8NHS0 232 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 TIFAQ96CG3 184 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 PKP4Q99569 1192 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 MARK1Q9P0L2 795 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 BTBD3Q9Y2F9 522 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 PCM1Q15154 2024 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 FPGTO14772 594 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 ATG13O75143 517 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 FGF19O95750 216 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 CYP17A1P05093 508 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 COX7A2P14406 83 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 PRPS1L1P21108 318 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 IMPA1P29218 277 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 DGKGP49619 791 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 PRLHRP49683 370 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 ABHD18Q0P651 414 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 MTAPQ13126 283 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 FAM9CQ8IZT9 166 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 SPPL3Q8TCT6 385 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 SGCDQ92629 289 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 ERLEC1Q96DZ1 483 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 FCRL1Q96LA6 429 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 ING2Q9H160 280 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 VNN3Q9NY84 501 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 AP3M1Q9Y2T2 418 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 SLC5A10A0PJK1 596 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 TMX2-CTNND1H3BSU7 103 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 PLK4O00444 970 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 E2F6O75461 281 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 CPSF4O95639 269 aaKnown RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 ZNF682O95780 498 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 DCTP40126 519 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 RAB39AQ14964 217 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 LDLRAP1Q5SW96 308 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 VN1R2Q8NFZ6 395 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 GLMNQ92990 594 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 SGK2Q9HBY8 427 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 FAM118AQ9NWS6 357 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 GULP1Q9UBP9 304 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 MAGEB17A8MXT2 336 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 K7ESM1 405 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 NPC1O15118 1278 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 SCN2BO60939 215 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 HPRP00739 348 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 HLA-EP13747 358 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 ENGP17813 658 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 BMPR1AP36894 532 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 CSTF3Q12996 717 aaKnown RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 DUOXA1Q1HG43 343 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 TMEM259Q4ZIN3 620 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 ZCCHC8Q6NZY4 707 aaKnown RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 ZNF621Q6ZSS3 439 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 ALDH16A1Q8IZ83 802 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 PYURFQ96I23 114 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 DPH2Q9BQC3 489 aaPredicted RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 CCM2Q9BSQ5 444 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 CXorf21Q9HAI6 301 aa19.42■□□□□ 0.7
VPS53-201ENST00000291074 SPATA6Q9NWH7 488 aaPredicted RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 NFKBIL1Q9UBC1 381 aaPredicted RBP19.42■□□□□ 0.7
VPS53-201ENST00000291074 KIAA1549LQ6ZVL6 1849 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 SERTM1A2A2V5 107 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 CLIC1O00299 241 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 SPINT1O43278 529 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 HS6ST1O60243 411 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 FGBP02675 491 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 CATP04040 527 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 CISD3P0C7P0 127 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 LAMP1P11279 417 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 EEF1B2P24534 225 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 HLCSP50747 726 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 ACSM2AQ08AH3 577 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 KCNC3Q14003 757 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 C16orf72Q14CZ0 275 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 LAPTM4AQ15012 233 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 ACSM2BQ68CK6 577 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 ERI1Q8IV48 349 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 HOMEZQ8IX15 550 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 ZCCHC7Q8N3Z6 543 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 NXPE3Q969Y0 559 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 C12orf43Q96C57 262 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 RSPRY1Q96DX4 576 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 CCDC138Q96M89 665 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 SAMD11Q96NU1 681 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 VPS35Q96QK1 796 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 PCDHGA8Q9Y5G5 932 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 GJA8P48165 433 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 KCNAB2Q13303 367 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 TSTA3Q13630 321 aaPredicted RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 C1orf52Q8N6N3 182 aaKnown RBP19.41■□□□□ 0.7
VPS53-201ENST00000291074 GPR156Q8NFN8 814 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 DCUN1D5Q9BTE7 237 aa19.41■□□□□ 0.7
VPS53-201ENST00000291074 UGDHO60701 494 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 CDK4P11802 303 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 RAE1P78406 368 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 GPR107Q5VW38 600 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 GRHL2Q6ISB3 625 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 ERAP2Q6P179 960 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 RBM23Q86U06 439 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 ADHFE1Q8IWW8 467 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms