RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 IFNA10P01566 189 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CYC1P08574 325 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 DLDP09622 509 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 AKR1A1P14550 325 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 LAG3P18627 525 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SERPINF1P36955 418 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 MAGEB1P43366 347 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 REEP5Q00765 189 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZNF484Q5JVG2 852 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TDRD10Q5VZ19 366 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ACSM5Q6NUN0 579 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CRTC3Q6UUV7 619 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZDHHC24Q6UX98 284 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZNF783Q6ZMS7 281 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ARMCX2Q7L311 632 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 LDHDQ86WU2 507 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TMEM17Q86X19 198 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 RFX6Q8HWS3 928 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SPAG16Q8N0X2 631 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 C2CD4CQ8TF44 421 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 BTN2A3PQ96KV6 586 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 MBOAT7Q96N66 472 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZNF408Q9H9D4 720 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 COPS7BQ9H9Q2 264 aaPredicted RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ADAMTS5Q9UNA0 930 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 DRG1Q9Y295 367 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 PLEKHA6Q9Y2H5 1048 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 U3KQV3 271 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TMEM191CA6NGB0 347 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 WASHC1A8K0Z3 465 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 WASH3PC4AMC7 463 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 KCNK1O00180 336 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SLC28A1O00337 649 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 HPGDSO60760 199 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CTNSO60931 367 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ERN1O75460 977 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 LRIG2O94898 1065 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZNF25P17030 456 aaPredicted RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 HLA-DPA1P20036 260 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 EPHA3P29320 983 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 RORAP35398 523 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 DCCP43146 1447 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CLCNKAP51800 687 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 NFKB2Q00653 900 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 RIPPLY1Q0D2K3 151 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 COL9A3Q14050 684 aaPredicted RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 GPR176Q14439 515 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 IRF3Q14653 427 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SLC1A5Q15758 541 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 USF2Q15853 346 aaPredicted RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 PNLIPRP3Q17RR3 467 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SLC35D3Q5M8T2 416 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ATRAIDQ6UW56 229 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 IL20RBQ6UXL0 311 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 WASH2PQ6VEQ5 465 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 PRSS35Q8N3Z0 413 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 YIPF7Q8N8F6 280 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 ZNF383Q8NA42 475 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 GPBAR1Q8TDU6 330 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 THAP3Q8WTV1 239 aaPredicted RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 GLYATL2Q8WU03 294 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 PHF10Q8WUB8 498 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CYGBQ8WWM9 190 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 OR1E3Q8WZA6 343 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TFAP2BQ92481 460 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TMEM143Q96AN5 459 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 SPATA13Q96N96 652 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 TAAR1Q96RJ0 339 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 DSN1Q9H410 356 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CARS2Q9HA77 564 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 KLHL11Q9NVR0 708 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 DHCR7Q9UBM7 475 aaKnown RBP7.54□□□□□ -1.2
GPNMB-201ENST00000258733 STUB1Q9UNE7 303 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 BTBD3Q9Y2F9 522 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 POFUT2Q9Y2G5 429 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 CRB1P82279 1406 aa7.54□□□□□ -1.2
GPNMB-201ENST00000258733 USP17L4A6NCW7 530 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 PPP1R3GB7ZBB8 358 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 GTPBP1O00178 669 aaKnown RBP7.53□□□□□ -1.2
GPNMB-201ENST00000258733 DLEU1O43261 78 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 GJB3O75712 270 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 SORBS2O94875 1100 aaKnown RBP7.53□□□□□ -1.2
GPNMB-201ENST00000258733 RPP14O95059 124 aaKnown RBP7.53□□□□□ -1.2
GPNMB-201ENST00000258733 TSPAN12O95859 305 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 APRTP07741 180 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 SPP1P10451 314 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 ITGA4P13612 1032 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 ATF2P15336 505 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 CTPS1P17812 591 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 GLDCP23378 1020 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 MGAT1P26572 445 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 KCNC1P48547 511 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 C1QTNF8P60827 252 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 SLC25A3Q00325 362 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 RPS6KA1Q15418 735 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 TBCCQ15814 346 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 TMEM119Q4V9L6 283 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 REP15Q6BDI9 236 aa7.53□□□□□ -1.2
GPNMB-201ENST00000258733 GGT6Q6P531 493 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms