RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.66■□□□□ 0.9
TRIM28-201ENST00000253024 CACUL1Q86Y37 369 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 RAB2BQ8WUD1 216 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 SH3GL1Q99961 368 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 SUV39H2Q9H5I1 410 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 ZDHHC3Q9NYG2 299 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 TRPS1Q9UHF7 1281 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 SNX6Q9UNH7 406 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 DYTNA2CJ06 578 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 C1SP09871 688 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 TTKP33981 857 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 ADPRMQ3LIE5 342 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF691Q5VV52 312 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF852Q6ZMS4 543 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 MACC1Q6ZN28 852 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 TTC29Q8NA56 475 aaPredicted RBP20.66■□□□□ 0.9
TRIM28-201ENST00000253024 LEMD2Q8NC56 503 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 COX4I2Q96KJ9 171 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 DEFB118Q96PH6 123 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 LINC00597Q9H2U6 94 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 RMND5AQ9H871 391 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 CCL16O15467 120 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 PTPN6P29350 595 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 IDH2P48735 452 aaKnown RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 DEFB103AP81534 67 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 SMARCB1Q12824 385 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 SLC44A2Q8IWA5 706 aaPredicted RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 ALDH16A1Q8IZ83 802 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 C1orf52Q8N6N3 182 aaKnown RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 C2orf15Q8WU43 125 aaKnown RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 KCNH6Q9H252 994 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 LSM7Q9UK45 103 aaKnown RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 A0A096LPI6 279 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 MAGEB17A8MXT2 336 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 INHBBP09529 407 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 OR56A5P0C7T3 313 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 C21orf33P30042 268 aaPredicted RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 MOGQ16653 247 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 RBM48Q5RL73 367 aaKnown RBP20.65■□□□□ 0.9
TRIM28-201ENST00000253024 OR2T5Q6IEZ7 315 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 CROCCP3Q8IVE0 287 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 CHPFQ8IZ52 775 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 CACTIN-AS1Q8N1I8 211 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 PIK3C3Q8NEB9 887 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 OR2T29Q8NH02 315 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 FAR1Q8WVX9 515 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 PROX1Q92786 737 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 FKBP10Q96AY3 582 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 CCDC115Q96NT0 180 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 TMEM184CQ9NVA4 438 aa20.65■□□□□ 0.9
TRIM28-201ENST00000253024 FUOMA2VDF0 154 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF99A8MXY4 864 aaPredicted RBP20.64■□□□□ 0.9
TRIM28-201ENST00000253024 ABLIM3O94929 683 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 URODP06132 367 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 PDHA2P29803 388 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 TMBIM6P55061 237 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 MC1RQ01726 317 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 CREMQ03060 361 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 TRIM16LQ309B1 348 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 ACBD5Q5T8D3 534 aaPredicted RBP20.64■□□□□ 0.9
TRIM28-201ENST00000253024 HSD11B1LQ7Z5J1 315 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 NLGN4XQ8N0W4 816 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 GLB1L3Q8NCI6 653 aaPredicted RBP20.64■□□□□ 0.9
TRIM28-201ENST00000253024 ACAT2Q9BWD1 397 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 RNF167Q9H6Y7 350 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 IL21Q9HBE4 155 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 KRT84Q9NSB2 600 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 KIAA1522Q9P206 1035 aaPredicted RBP20.64■□□□□ 0.9
TRIM28-201ENST00000253024 BLOC1S6Q9UL45 172 aa20.64■□□□□ 0.9
TRIM28-201ENST00000253024 TRBV5-3A0A0A0MS03 114 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 AMD1P17707 334 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 RPS3P23396 243 aaKnown RBP eCLIP20.64■□□□□ 0.892e-9■■■□□ 17
TRIM28-201ENST00000253024 CRATP43155 626 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 CTSCP53634 463 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 GBX1Q14549 363 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 TPRG1Q6ZUI0 275 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 USP45Q70EL2 814 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 WRAP53Q9BUR4 548 aaKnown RBP20.64■□□□□ 0.89
TRIM28-201ENST00000253024 ELAC1Q9H777 363 aaKnown RBP20.64■□□□□ 0.89
TRIM28-201ENST00000253024 ITM2CQ9NQX7 267 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 SACM1LQ9NTJ5 587 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 RHCGQ9UBD6 479 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 CCDC88CQ9P219 2028 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 ERN1O75460 977 aaKnown RBP20.64■□□□□ 0.89
TRIM28-201ENST00000253024 RECQL5O94762 991 aaPredicted RBP20.64■□□□□ 0.89
TRIM28-201ENST00000253024 EPN2O95208 641 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 SPATS1Q496A3 300 aa20.64■□□□□ 0.89
TRIM28-201ENST00000253024 MRPS31Q92665 395 aaKnown RBP20.64■□□□□ 0.89
TRIM28-201ENST00000253024 PLK4O00444 970 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 GZMMP51124 257 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 ACSM2AQ08AH3 577 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 CTF1Q16619 201 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 ACSM2BQ68CK6 577 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 CCDC71Q8IV32 467 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TCEAL4Q96EI5 215 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 RIOK2Q9BVS4 552 aaKnown RBP20.63■□□□□ 0.89
TRIM28-201ENST00000253024 DNAJC11Q9NVH1 559 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 SLC6A14Q9UN76 642 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 PRKAB1Q9Y478 270 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TSPAN6O43657 245 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms