RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Vmn2r24D3YUI0 854 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r116E9Q6I0 856 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ppef1O35655 650 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hcn4O70507 1186 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ifngr1P15261 477 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rab8aP55258 207 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fut11Q8BHC9 489 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Dgat2Q9DCV3 388 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Bag6Q9Z1R2 1154 aaKnown RBP15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 A0A286YDU1 74 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm21897J3KMP5 500 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm21750L7N228 499 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PkdccQ5RJI4 492 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 WtipQ7TQJ8 398 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 H2-M10.2Q85ZW9 329 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nlrp10Q8CCN1 673 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fabp12Q9DAK4 132 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Wdr54Q9R0D8 334 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Akap8lQ9R0L7 642 aaKnown RBP15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adam18Q9R157 719 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Itgb6Q9Z0T9 787 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Spag17Q5S003 2320 aa15.17■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm3476K7N6V0 257 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm10324L7N208 604 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gja1P23242 382 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Traf6P70196 530 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Zzz3Q6KAQ7 910 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Inppl1Q6P549 1257 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Thoc7Q7TMY4 204 aaKnown RBP15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Arl15Q8BGR6 204 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 NapepldQ8BH82 396 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pdia5Q921X9 517 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ankra2Q99PE2 312 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Isca2Q9DCB8 154 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Msgn1Q9JK54 188 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 DguokQ9QX60 277 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Dgat1Q9Z2A7 498 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r-ps130A0A140T8U3 855 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm13088A2AGW6 460 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Mgat4eA6H684 439 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Skint1A7TZE6 364 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Tnfrsf25B1AWN9 411 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hcn3O88705 779 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Marf1Q8BJ34 1730 aaKnown RBP15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 TrhdeQ8K093 1025 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PiguQ8K358 434 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Olfr170Q8VGL6 313 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Slc5a2Q923I7 670 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rnf144aQ925F3 292 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nudt7Q99P30 236 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PglsQ9CQ60 257 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Get4Q9D1H7 327 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 P33monoxQ9DBN4 303 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm13078A2AGW8 474 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Kcnk1O08581 336 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Abraxas2Q3TCJ1 415 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Dnajc16Q80TN4 772 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fignl1Q8BPY9 683 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn1r18Q8R2C8 299 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Olfr846Q8VET8 312 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fbxl20Q9CZV8 436 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nudt14Q9D142 222 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Q9D4W2 315 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 TesclQ9DAJ7 231 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rnf11Q9QYK7 154 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 ClcnkbQ9WUB6 687 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm7275E9Q1B3 247 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adh5P28474 374 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hexim2Q3TVI4 313 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hbq1bQ3U0A6 142 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rars2Q3U186 578 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Olfr382Q8VF79 312 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pcdhgc3Q91XX1 934 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Plpp3Q99JY8 312 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nme4Q9WV84 186 aa15.16■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nt5c1aA3KFX0 365 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Kctd17E0CYQ0 296 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm20441G3UYJ7 252 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r61L7N2B8 865 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Sap18O55128 153 aaKnown RBP15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Arl6O88848 186 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Padi2Q08642 673 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Defb23Q30KP0 166 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 RergQ8R367 199 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Exosc4Q921I9 245 aaKnown RBP15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hspa14Q99M31 509 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PyglQ9ET01 850 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Cldn9Q9Z0S7 217 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 MycsQ9Z304 431 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 H2-BlV9GXR0 257 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r50E9PW61 861 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r114E9Q281 856 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm17174M0QWQ9 212 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Slc32a1O35633 525 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Atp1b2P14231 290 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Kcnj9P48543 393 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Matn1P51942 500 aaKnown RBP15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pnrc1Q3TWH3 297 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Actr3bQ641P0 418 aa15.15■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pik3c3Q6PF93 887 aa15.15■□□□□ 0.02
Retrieved 100 of 22,080 RNA–protein pairs in 38.6 ms