RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 OR5B2Q96R09 309 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZCCHC4Q9H5U6 513 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ITGA11Q9UKX5 1188 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C19orf53Q9UNZ5 99 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA2Q9Y5H9 948 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ABCC4O15439 1325 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MIF4GDA9UHW6 222 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OGTO15294 1046 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 IFNA7P01567 189 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SHMT2P34897 504 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OR4D1Q15615 310 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GPRC6AQ5T6X5 926 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ABHD15Q6UXT9 468 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 HPS6Q86YV9 775 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CHURC1Q8WUH1 139 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C12orf43Q96C57 262 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AP1S3Q96PC3 154 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PLSCR4Q9NRQ2 329 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 B4GALT6Q9UBX8 382 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PACSIN3Q9UKS6 424 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CCDC7Q96M83 1385 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ANAPC1Q9H1A4 1944 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 A6NNC1 897 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 H0Y8G0 127 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PODXLO00592 558 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 HTRA2O43464 458 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 B4GALT4O60513 344 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PTCD1O75127 700 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 EBLN1P0CF75 366 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TBXAS1P24557 533 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TALDO1P37837 337 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GRIA4P48058 902 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PREPP48147 710 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 VEGFCP49767 419 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FHITP49789 147 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RIPPLY3P57055 190 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DGUOKQ16854 277 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GLRA4Q5JXX5 417 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TTC38Q5R3I4 469 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 VWA1Q6PCB0 445 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CES3Q6UWW8 571 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 BAIAP2L2Q6UXY1 529 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CAMKMTQ7Z624 323 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZBTB33Q86T24 672 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NEDD1Q8NHV4 660 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 WDR36Q8NI36 951 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DIO2Q92813 273 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM203Q969S6 136 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF707Q96C28 371 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MED8Q96G25 268 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PPP1R16AQ96I34 528 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TRIM31Q9BZY9 425 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ANKRA2Q9H9E1 313 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SPG21Q9NZD8 308 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AGPSO00116 658 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CLDN4O14493 209 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SOX15O60248 233 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PGK1P00558 417 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ALDH2P05091 517 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 YES1P07947 543 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ARAFP10398 606 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ALADP13716 330 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CD36P16671 472 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AKAP5P24588 427 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GRIK2Q13002 908 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DPY19L1Q2PZI1 675 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PLEKHH3Q7Z736 793 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AMIGO1Q86WK6 493 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TRAPPC5Q8IUR0 188 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OR51D1Q8NGF3 324 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OR4D10Q8NGI6 311 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C12orf66Q96MD2 445 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF317Q96PQ6 595 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RAB33BQ9H082 229 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SLITRK2Q9H156 845 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MBIPQ9NS73 344 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CCM2LQ9NUG4 571 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 UBQLN1Q9UMX0 589 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA3Q9Y5H8 950 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OAS3Q9Y6K5 1087 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RFX7Q2KHR2 1363 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 UBE4BO95155 1302 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 A0A087X0M5 115 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 A0A1B0GX30 115 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PRR5-ARHGAP8B1AHC4 643 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TLX2O43763 284 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF8P17098 575 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FASLGP48023 281 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SOX2P48431 317 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 UBE2IP63279 158 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 OGDHQ02218 1023 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FMR1Q06787 632 aaKnown RBP eCLIP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DGKZQ13574 1117 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF284Q2VY69 593 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NOL9Q5SY16 702 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TRAPPC3LQ5T215 181 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 AKR1C8PQ5T2L2 129 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NET1Q7Z628 596 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SCML4Q8N228 414 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C11orf24Q96F05 449 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms