RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PLLPQ9Y342 182 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 ASB1Q9Y576 335 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 KLK4Q9Y5K2 254 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 SNRNP200O75643 2136 aaKnown RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 A8MT66 165 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 CSO75390 466 aaKnown RBP18.99■□□□□ 0.63
UPF3A-211ENST00000618700 SPAG7O75391 227 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 CCNDBP1O95273 360 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 HSPA7P48741 367 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 ALDH18A1P54886 795 aaKnown RBP18.99■□□□□ 0.63
UPF3A-211ENST00000618700 NFKB2Q00653 900 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 TSTA3Q13630 321 aaPredicted RBP18.99■□□□□ 0.63
UPF3A-211ENST00000618700 PFKFB4Q16877 469 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 FBXO48Q5FWF7 155 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 SNAP47Q5SQN1 464 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 PHF19Q5T6S3 580 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 AGBL2Q5U5Z8 902 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 CACHD1Q5VU97 1274 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 LCTLQ6UWM7 567 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 FAM20CQ8IXL6 584 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 GALNT15Q8N3T1 639 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 KLHL6Q8WZ60 621 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 ARL8AQ96BM9 186 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 SLC41A2Q96JW4 573 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 CNOT10Q9H9A5 744 aaKnown RBP18.99■□□□□ 0.63
UPF3A-211ENST00000618700 PTPRBP23467 1997 aa18.99■□□□□ 0.63
UPF3A-211ENST00000618700 SPTBN2O15020 2390 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 ADAMTS20P59510 1910 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 IGKV1-8A0A0C4DH67 115 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 HGSO14964 777 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 SMIM24O75264 130 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 RASSF9O75901 435 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 PVRP15151 417 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 ST6GAL1P15907 406 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 CDH3P22223 829 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 GDF5P43026 501 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 AGTR2P50052 363 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 YBX1P67809 324 aaKnown RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 ABATP80404 500 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 PRDX1Q06830 199 aaKnown RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 C16orf72Q14CZ0 275 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 SF1Q15637 639 aaKnown RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 THEMIS2Q5TEJ8 643 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 KIAA1614Q5VZ46 1190 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 ICE2Q659A1 982 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 TMPRSS7Q7RTY8 843 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 LRRC70Q7Z2Q7 622 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 THOC6Q86W42 341 aaKnown RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 KMT5CQ86Y97 462 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 CHCHD4Q8N4Q1 142 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 PTGR2Q8N8N7 351 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 RCBTB1Q8NDN9 531 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 RDH11Q8TC12 318 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 GRAMD1AQ96CP6 724 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 LIN37Q96GY3 246 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-211ENST00000618700 TRAPPC9Q96Q05 1148 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 HAUS8Q9BT25 410 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 CD244Q9BZW8 370 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 SLC6A20Q9NP91 592 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 SLC17A7Q9P2U7 560 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 SH2B3Q9UQQ2 575 aa18.98■□□□□ 0.63
UPF3A-211ENST00000618700 G3V2L1 256 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 TMX2-CTNND1H3BSU7 103 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 STX16-NPEPL1H3BU86 382 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 STX16O14662 325 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 PRPF4O43172 522 aaKnown RBP eCLIP18.97■□□□□ 0.633e-7■■■□□ 17.1
UPF3A-211ENST00000618700 DLX3O60479 287 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 STK16O75716 305 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 WDR47O94967 919 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ZBTB11O95625 1053 aaPredicted RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ADRB1P08588 477 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 NPPBP16860 134 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 TAC1P20366 129 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 MAGP20916 626 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ATP5F1P24539 256 aaPredicted RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 CMPK1P30085 196 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 GRIA3P42263 894 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 MAGOHP61326 146 aaKnown RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 PCBP2Q15366 365 aaKnown RBP eCLIP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ZIC1Q15915 447 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 TTMPQ5BVD1 217 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 METTL2BQ6P1Q9 378 aaKnown RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ZYG11AQ6WRX3 759 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 C17orf64Q86WR6 236 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 C19orf47Q8N9M1 422 aaKnown RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 TCP10LQ8TDR4 215 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ESAMQ96AP7 390 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 CHRNA10Q9GZZ6 450 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 IQCGQ9H095 443 aaKnown RBP18.97■□□□□ 0.63
UPF3A-211ENST00000618700 ABCF3Q9NUQ8 709 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 SLC22A14Q9Y267 594 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 BTRCQ9Y297 605 aa18.97■□□□□ 0.63
UPF3A-211ENST00000618700 LRRC14BA6NHZ5 514 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 SLC9B1P1A6NJY1 282 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 A8MU76 341 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 DYNC1I1O14576 645 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 NELFEP18615 380 aaKnown RBP18.96■□□□□ 0.63
UPF3A-211ENST00000618700 TARDBPQ13148 414 aaKnown RBP eCLIP18.96■□□□□ 0.638e-6■□□□□ 10.7
UPF3A-211ENST00000618700 NAA25Q14CX7 972 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 ZNF425Q6IV72 752 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms