RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	SRA1	Q9HD15	236 aa	Known RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	AGPAT4	Q9NRZ5	378 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	C2orf78	A6NCI8	922 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PTGES3L	E9PB15	166 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	AXIN1	O15169	862 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ACOX3	O15254	700 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CD3EAP	O15446	510 aa	Known RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TNFRSF21	O75509	655 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RHOBTB1	O94844	696 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RB1	P06400	928 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ACAA1	P09110	424 aa	Predicted RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BMP2	P12643	396 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ICAM2	P13598	275 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GJA1	P17302	382 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	EN2	P19622	333 aa	Predicted RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	IL12A	P29459	219 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	HOXA6	P31267	233 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ATP5C1	P36542	298 aa	Known RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TWF1	Q12792	350 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FAM45BP	Q6NSW5	357 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	LINGO4	Q6UY18	593 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PIWIL3	Q7Z3Z3	882 aa	Known RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BTLA	Q7Z6A9	289 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TMEM199	Q8N511	208 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CELF2-AS1	Q8N7Q2	184 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR9A1P	Q8NGU1	263 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR2T11	Q8NH01	316 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FAM45A	Q8TCE6	357 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ADAMTS18	Q8TE60	1221 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TBCD	Q9BTW9	1192 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ABCG8	Q9H221	673 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SPACA1	Q9HBV2	294 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TMEM248	Q9NWD8	314 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ATP6V1H	Q9UI12	483 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PCDHGC4	Q9Y5F7	938 aa		11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	COL4A4	P53420	1690 aa	Predicted RBP	11.31	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063		A0A1B0GVC2	190 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BTN3A1	O00481	513 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	XYLB	O75191	536 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	WISP3	O95389	354 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GLP2R	O95838	553 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	C1R	P00736	705 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SHMT2	P34897	504 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MAGEA11	P43364	429 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ARHGDIA	P52565	204 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RHAG	Q02094	409 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CLC	Q05315	142 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF33A	Q06730	810 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CYBRD1	Q53TN4	286 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	C16orf59	Q7L2K0	433 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR52B6	Q8NGF0	335 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TANK	Q92844	425 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CHID1	Q9BWS9	393 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PRM3	Q9NNZ6	103 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PALMD	Q9NP74	551 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TAS2R7	Q9NYW3	318 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	WARS2	Q9UGM6	360 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CNOT11	Q9UKZ1	510 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SARDH	Q9UL12	918 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FRS3	O43559	492 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR4F21	O95013	312 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SOD2	P04179	222 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	LBP	P18428	481 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MAP4	P27816	1152 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MLLT10	P55197	1068 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CREB5	Q02930	508 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FPGS	Q05932	587 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	HABP2	Q14520	560 aa	Predicted RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF235	Q14590	738 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SLC36A3	Q495N2	470 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZBED5	Q49AG3	693 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TCTE1	Q5JU00	501 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SLC30A6	Q6NXT4	461 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PATL1	Q86TB9	770 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PIANP	Q8IYJ0	282 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CLEC4F	Q8N1N0	589 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DEPDC4	Q8N2C3	294 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FBXO39	Q8N4B4	442 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ATP6V0D2	Q8N8Y2	350 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FNDC5	Q8NAU1	212 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BIRC7	Q96CA5	298 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GPR21	Q99679	349 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	EDEM2	Q9BV94	578 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PRKD2	Q9BZL6	878 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CCDC90B	Q9GZT6	254 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MFSD1	Q9H3U5	465 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BRD7	Q9NPI1	651 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PRDM8	Q9NQV8	689 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MRPL17	Q9NRX2	175 aa	Known RBP	11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SPG21	Q9NZD8	308 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SELENON	Q9NZV5	590 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GRHPR	Q9UBQ7	328 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	LIMD1	Q9UGP4	676 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZMYM5	Q9UJ78	669 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF225	Q9UK10	706 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	HCN4	Q9Y3Q4	1203 aa		11.3	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DOK2	O60496	412 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TRIM16	O95361	564 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms