RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 C19orf25Q9UFG5 118 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-204ENST00000581226 PPP2R2CQ9Y2T4 447 aa3.99□□□□□ -1.77
SMCHD1-204ENST00000581226 A0A1W2PPK0 400 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 CASTOR2A6NHX0 329 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 NTN3O00634 580 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 ZNF195O14628 629 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 ARHGEF9O43307 516 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 EXTL3O43909 919 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 CCDC175P0C221 793 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 EPCAMP16422 314 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 LHCGRP22888 699 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 VEGFCP49767 419 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 VAMP7P51809 220 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 COG2Q14746 738 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 FCN2Q15485 313 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 NPTX1Q15818 432 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 KRBOX4Q5JUW0 171 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 C1orf141Q5JVX7 400 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 OR4A47Q6IF82 309 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 UGT3A1Q6NUS8 523 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 ANKRD13CQ8N6S4 541 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 NOA1Q8NC60 698 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 SNRNP27Q8WVK2 155 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 KCNE4Q8WWG9 221 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 EXT2Q93063 718 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 C10orf90Q96M02 699 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 OPRPNQ99935 248 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 SYT15Q9BQS2 421 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 NAA11Q9BSU3 229 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 ERVMER34-1Q9H9K5 563 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 GSN-AS1Q9NRJ2 163 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 ZDHHC18Q9NUE0 388 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 CFDP1Q9UEE9 299 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 MAN1B1Q9UKM7 699 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 CHKBQ9Y259 395 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 EXOGQ9Y2C4 368 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 R4GN57 208 aa3.98□□□□□ -1.77
SMCHD1-204ENST00000581226 IGKV3D-15A0A087WSY6 115 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 SNX3O60493 162 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 RPS6KA5O75582 802 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 CD27P26842 260 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 CLK1P49759 484 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 LBX1P52954 281 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 RAD23AP54725 363 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 UBASH3AP57075 661 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 GSDMDP57764 484 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 SLC25A47Q6Q0C1 308 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 ZNF497Q6ZNH5 498 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 BTN2A1Q7KYR7 527 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 CCDC186Q7Z3E2 898 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 ZNF614Q8N883 585 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 RASGEF1AQ8N9B8 481 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 OR10G8Q8NGN5 311 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 OR10Q1Q8NGQ4 319 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 OR1L3Q8NH93 324 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 AZIN2Q96A70 460 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 POM121L2Q96KW2 1035 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 LINC00479Q96M42 142 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 NECTIN4Q96NY8 510 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 SLC25A23Q9BV35 468 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 KRTAP4-4Q9BYR3 166 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 GFRA4Q9GZZ7 299 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 THAP2Q9H0W7 228 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 ST6GALNAC4Q9H4F1 302 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 XAB2Q9HCS7 855 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 DNAJC4Q9NNZ3 241 aa3.97□□□□□ -1.77
SMCHD1-204ENST00000581226 FPGTO14772 594 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 TIMM44O43615 452 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 DKC1O60832 514 aaKnown RBP eCLIP3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 ZFAND5O76080 213 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 SEC24AO95486 1093 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 GSRP00390 522 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 APOA4P06727 396 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 SLC2A2P11168 524 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 MYL6BP14649 208 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 TYMPP19971 482 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 LUMP51884 338 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 MZT1Q08AG7 82 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 NONOQ15233 471 aaKnown RBP eCLIP3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 PPP1R21Q6ZMI0 780 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 KRTAP7-1Q8IUC3 87 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 KLHDC1Q8N7A1 406 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 OR7A2PQ8NGA2 310 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 SMAP2Q8WU79 429 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 CENPTQ96BT3 561 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 RADILQ96JH8 1075 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 C4orf45Q96LM5 186 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 FAM129AQ9BZQ8 928 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 MAN2C1Q9NTJ4 1040 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 POLLQ9UGP5 575 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 ANGPTL3Q9Y5C1 460 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 LIPGQ9Y5X9 500 aa3.96□□□□□ -1.78
SMCHD1-204ENST00000581226 KIF26BQ2KJY2 2108 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 TRAV24A0A0B4J272 114 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 O00370 1275 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 MAGEC1O60732 1142 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 ATP6AP2O75787 350 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 NXPH2O95156 264 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 PENKP01210 267 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms