RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CLVS1Q8IUQ0 354 aaPredicted RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 SLC22A15Q8IZD6 547 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 PNPT1Q8TCS8 783 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 CYB5D2Q8WUJ1 264 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 SORCS1Q8WY21 1168 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 RAD18Q9NS91 495 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 GPRC5BQ9NZH0 403 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 TMEM202A6NGA9 273 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 ARHGEF33A8MVX0 844 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 SERPINA1P01009 418 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 HOXB6P17509 224 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 CD22P20273 847 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 PRPS1L1P21108 318 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 MAP4P27816 1152 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 IRF8Q02556 426 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 CSTF3Q12996 717 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 LAPTM5Q13571 262 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 SIM2Q14190 667 aaPredicted RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 CBX2Q14781 532 aaPredicted RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 OR4F3Q6IEY1 312 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 THOC6Q86W42 341 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 ADHFE1Q8IWW8 467 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 RNF175Q8N4F7 328 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 KIAA1958Q8N8K9 716 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 NAT16Q8N8M0 369 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 MRPL43Q8N983 215 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 PJA1Q8NG27 643 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 SVIPQ8NHG7 77 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 BTN2A2Q8WVV5 523 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 ISOC1Q96CN7 298 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 DTNBP1Q96EV8 351 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 RBM4BQ9BQ04 359 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 RBM4Q9BWF3 364 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 TOR3AQ9H497 397 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 LIN28AQ9H9Z2 209 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 SMURF2Q9HAU4 748 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 THG1LQ9NWX6 298 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 MARK1Q9P0L2 795 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 IFT80Q9P2H3 777 aaPredicted RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 PTPRSQ13332 1948 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 SOBPA7XYQ1 873 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 BOLA2-SMG1P6H3BVE0 249 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 GNGT2O14610 69 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 KIAA0355O15063 1070 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 PRMT3O60678 531 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 RECQL5O94762 991 aaPredicted RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 MYCLP1P12525 358 aaPredicted RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 SYN1P17600 705 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 TTKP33981 857 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 SHMT2P34897 504 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 NNMTP40261 264 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 KIR3DL1P43629 444 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 HTRA3P83110 453 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 CTBSQ01459 385 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 EPS8Q12929 822 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 ABRQ12979 859 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 PMS2P3Q13401 168 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 DPY19L1Q2PZI1 675 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 ZNF284Q2VY69 593 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 ZNF805Q5CZA5 627 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 XKR6Q5GH73 641 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 PLPP4Q5VZY2 271 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 TTC23Q5W5X9 447 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 DPPA4Q7L190 304 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 ZNF551Q7Z340 670 aaPredicted RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 TECPR1Q7Z6L1 1165 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 RAVER1Q8IY67 606 aaKnown RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 HS3ST5Q8IZT8 346 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 ZCCHC7Q8N3Z6 543 aaKnown RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 RASGEF1AQ8N9B8 481 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 WDR20Q8TBZ3 569 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 GFM2Q969S9 779 aaKnown RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 PYURFQ96I23 114 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 CCDC138Q96M89 665 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 VPS35Q96QK1 796 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 MBOAT4Q96T53 435 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 MTG2Q9H4K7 406 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 CXorf21Q9HAI6 301 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 SPATA6Q9NWH7 488 aaPredicted RBP9.77□□□□□ -0.84
VPS53-220ENST00000576149 FAM118AQ9NWS6 357 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 VPS29Q9UBQ0 182 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 FAM8A1Q9UBU6 413 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 IL36AQ9UHA7 158 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 HCFC2Q9Y5Z7 792 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 WNT6Q9Y6F9 365 aa9.77□□□□□ -0.84
VPS53-220ENST00000576149 DOCK6Q96HP0 2047 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 CROCCQ5TZA2 2017 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 TSPAN6O43657 245 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 SCN2BO60939 215 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 CDK4P11802 303 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 ELK4P28324 431 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 YAP1P46937 504 aaKnown RBP9.77□□□□□ -0.85
VPS53-220ENST00000576149 CTSCP53634 463 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 SRSF11Q05519 484 aaKnown RBP9.77□□□□□ -0.85
VPS53-220ENST00000576149 SLC14A1Q13336 389 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 UGT8Q16880 541 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 LDLRAP1Q5SW96 308 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 ZCCHC8Q6NZY4 707 aaKnown RBP9.77□□□□□ -0.85
VPS53-220ENST00000576149 DOK6Q6PKX4 331 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms