RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ANKRD20A4Q4UJ75 823 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 PLEKHS1Q5SXH7 462 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 ATP1A1-AS1Q5TC04 95 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 PRAMEF17Q5VTA0 474 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 KIAA0930Q6ICG6 404 aaPredicted RBP7.17□□□□□ -1.26
NUP88-205ENST00000572809 NEPROQ6NW34 567 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 UNC5DQ6UXZ4 953 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 GK5Q6ZS86 529 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 CDHR3Q6ZTQ4 885 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 OTOAQ7RTW8 1153 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 HDXQ7Z353 690 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SLC38A9Q8NBW4 561 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 OR1L3Q8NH93 324 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 LKAAEAR1Q8TD35 194 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 GRK7Q8WTQ7 553 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SEC14L1Q92503 715 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 N4BP2L2Q92802 583 aaPredicted RBP7.17□□□□□ -1.26
NUP88-205ENST00000572809 MR1Q95460 341 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 GAL3ST3Q96A11 431 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 RAD51AP1Q96B01 352 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 LRFN5Q96NI6 719 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 BIRC8Q96P09 236 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 TRIM55Q9BYV6 548 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SLC7A5P2Q9GIP4 190 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 TWSG1Q9GZX9 223 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 KCNF1Q9H3M0 494 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 XAB2Q9HCS7 855 aaKnown RBP7.17□□□□□ -1.26
NUP88-205ENST00000572809 FAM60AQ9NP50 221 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 STARD5Q9NSY2 213 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SPHK1Q9NYA1 384 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SAMD15Q9P1V8 674 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 TUBD1Q9UJT1 453 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SLC39A10Q9ULF5 831 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 SNX12Q9UMY4 172 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 CRYL1Q9Y2S2 319 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 HEMK1Q9Y5R4 338 aaPredicted RBP7.17□□□□□ -1.26
NUP88-205ENST00000572809 MRFAP1Q9Y605 127 aa7.17□□□□□ -1.26
NUP88-205ENST00000572809 A0A0J9YY10 115 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 GOLGA6L10A0A0M3HER8 536 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 CTAGE9A4FU28 777 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 E7EQ34 232 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 H3BMM5 538 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ZNF749O43361 778 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 TMEM63AO94886 807 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ATE1O95260 518 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 C1orf105O95561 183 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ESR1P03372 595 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 HBQ1P09105 142 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 PKMP14618 531 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 OGNP20774 298 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 CYP2A7P20853 494 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 PTPN4P29074 926 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 FNTAP49354 379 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 RAB28P51157 221 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ADARP55265 1226 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 ITGA1P56199 1179 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 GPS2Q13227 327 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 THOC5Q13769 683 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 DHX34Q14147 1143 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 GRB7Q14451 532 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SETDB1Q15047 1291 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 PPP1R7Q15435 360 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SF1Q15637 639 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 ZIC1Q15915 447 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 TYSND1Q2T9J0 566 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ZNF789Q5FWF6 425 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 CTSL3PQ5NE16 218 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 RNF187Q5TA31 235 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 IZUMO3Q5VZ72 239 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 LCN10Q6JVE6 187 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ZNF517Q6ZMY9 492 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 CENPUQ71F23 418 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 TMEM135Q86UB9 458 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 TRIM73Q86UV7 250 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 DCUN1D3Q8IWE4 304 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 PPIL6Q8IXY8 311 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 GPR135Q8IZ08 494 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 DSELQ8IZU8 1212 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 DTWD1Q8N5C7 304 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 C2orf73Q8N5S3 287 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 NAT8LQ8N9F0 302 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 C19orf47Q8N9M1 422 aaKnown RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 LINC01555Q8NAE3 123 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 FLVCR1-AS1Q8TAF5 88 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 MAGEC3Q8TD91 643 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SKA2Q8WVK7 121 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 LPGAT1Q92604 370 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SLC22A18Q96BI1 424 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SIGLEC10Q96LC7 697 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 FOPNLQ96NB1 174 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SERPINB12Q96P63 405 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 RUFY1Q96T51 708 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 MENTQ9BUN1 341 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 CHRNA10Q9GZZ6 450 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 SPRTNQ9H040 489 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 CHST8Q9H2A9 424 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ACTL8Q9H568 366 aa7.16□□□□□ -1.26
NUP88-205ENST00000572809 ACTR5Q9H9F9 607 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.16□□□□□ -1.26
NUP88-205ENST00000572809 CIDEBQ9UHD4 219 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms