RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IGKV1-8A0A0C4DH67 115 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 TCRBV7S3A2A0A539 114 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 OR2A25A4D2G3 310 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ANKUB1A6NFN9 424 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 TARM1B6A8C7 271 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 H0YHG0 523 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PEX12O00623 359 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PRMT5O14744 637 aaPredicted RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 KLHL18O94889 574 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 IFNB1P01574 187 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 CD63P08962 238 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ERGP11308 486 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 RPS3P23396 243 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS53-213ENST00000572334 VARSP26640 1264 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 NMBRP28336 390 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 GLRBP48167 497 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 MNAT1P51948 309 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ARSFP54793 590 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ETF1P62495 437 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 SNX1Q13596 522 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 CYP2A13Q16696 494 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PRTGQ2VWP7 1150 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 FASTKD1Q53R41 847 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 WASHC2DQ5SRD0 308 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PRAMEF13Q5VWM6 474 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ATG9BQ674R7 924 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 FBXO42Q6P3S6 717 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 RNF44Q7L0R7 432 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 LAPTM4BQ86VI4 370 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 HOOK3Q86VS8 718 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 SYCE1Q8N0S2 351 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 SHISA5Q8N114 240 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 CNPY4Q8N129 248 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 CEP112Q8N8E3 955 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ST6GALNAC3Q8NDV1 305 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 OR2L3Q8NG85 312 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 HMGCLL1Q8TB92 370 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PPP4R1Q8TF05 950 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ZUFSPQ96AP4 578 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 NACC2Q96BF6 587 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 LRRC45Q96CN5 670 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 BAG1Q99933 345 aaPredicted RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 WDR77Q9BQA1 342 aaPredicted RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 SELENOSQ9BQE4 189 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 PLCD4Q9BRC7 762 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 TRIM56Q9BRZ2 755 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 ILKAPQ9H0C8 392 aaPredicted RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 SOX17Q9H6I2 414 aaPredicted RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 RAB6BQ9NRW1 208 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 CATSPERZQ9NTU4 200 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 MAP10Q9P2G4 905 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 ADAM21Q9UKJ8 722 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 G3BP2Q9UN86 482 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 SLC5A6Q9Y289 635 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 COPG1Q9Y678 874 aaKnown RBP6.42□□□□□ -1.38
VPS53-213ENST00000572334 MAU2Q9Y6X3 613 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 DCHS2Q6V1P9 2916 aa6.42□□□□□ -1.38
VPS53-213ENST00000572334 EML6Q6ZMW3 1958 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 A0A0J9YVX5 310 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 A0A1W2PQ72 361 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 HYKKA2RU49 373 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 EBAG9O00559 213 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 CD3EAPO15446 510 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 NIPSNAP2O75323 286 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 IPO13O94829 963 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 FKBP9O95302 570 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 IPO7O95373 1038 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 MATN4O95460 622 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 IGHEP01854 428 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 ALPPP05187 535 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 APOA4P06727 396 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 APRTP07741 180 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 F7P08709 466 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 COX6A1P12074 109 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 ITGA3P26006 1051 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SOX11P35716 441 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 TSFMP43897 325 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 TDGF1P3P51864 188 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SESN2P58004 480 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 VSX2P58304 361 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 PRAMEP78395 509 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 KLC1Q07866 573 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 KIF5AQ12840 1032 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 GRM7Q14831 915 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SLMAPQ14BN4 828 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SF1Q15637 639 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 TYSND1Q2T9J0 566 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 VWA2Q5GFL6 755 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 ZC3H12BQ5HYM0 836 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 TCTE1Q5JU00 501 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 PCID2Q5JVF3 399 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 YOD1Q5VVQ6 348 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 ZNF324BQ6AW86 544 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 CES3Q6UWW8 571 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 PPP1R21Q6ZMI0 780 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 NLRP9Q7RTR0 991 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 TICAM1Q8IUC6 712 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 PARP9Q8IXQ6 854 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 ZADH2Q8N4Q0 377 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms