RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ARHGAP10A1A4S6 786 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PIPSLA2A3N6 862 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 IGLON5A6NGN9 336 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 OTOL1A6NHN0 477 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 EPOPA6NHQ4 379 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 LRRC14BA6NHZ5 514 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CCDC85CA6NKD9 419 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CHURC1-FNTBB4DL54 471 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 H0Y3Z8 333 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 K7EQS6 105 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 FBP2O00757 339 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ACOT8O14734 319 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 MTX2O75431 263 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 KRT36O76013 467 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PDE5AO76074 875 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 BAG2O95816 211 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PCCBP05166 539 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZCCHC18P0CG32 403 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 G6PDP11413 515 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 AMD1P17707 334 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 GM2AP17900 193 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF10P21506 573 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 SLC6A2P23975 617 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SHMT2P34897 504 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 RABIFP47224 123 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ANXA11P50995 505 aaKnown RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 RAB28P51157 221 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CCR5P51681 352 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CCR8P51685 355 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CTSCP53634 463 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TRA2BP62995 288 aaKnown RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF763Q0D2J5 394 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 MTAPQ13126 283 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 GRB7Q14451 532 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 KRT33BQ14525 404 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PTPRRQ15256 657 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TEAD4Q15561 434 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 VPS26BQ4G0F5 336 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TIGD2Q4W5G0 525 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 USP39Q53GS9 565 aaKnown RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 LRRC73Q5JTD7 316 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TCHHL1Q5QJ38 904 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 LRIF1Q5T3J3 769 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 THEMIS2Q5TEJ8 643 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 NIPAL1Q6NVV3 410 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 NOXRED1Q6NXP6 359 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 IRGCQ6NXR0 463 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF852Q6ZMS4 543 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SPRED2Q7Z698 418 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SERPINA11Q86U17 422 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SYT12Q8IV01 421 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 FUNDC1Q8IVP5 155 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SDR16C5Q8N3Y7 309 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF366Q8N895 744 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 IL17RCQ8NAC3 791 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TP53I13Q8NBR0 393 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 C7orf57Q8NEG2 295 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 BHLHE22Q8NFJ8 381 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 ABHD11Q8NFV4 315 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 OR14C36Q8NHC7 312 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 WDR20Q8TBZ3 569 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SNX19Q92543 992 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 FOXJ1Q92949 421 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 VPS33AQ96AX1 596 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 SDCCAG3Q96C92 435 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 LRCH3Q96II8 777 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 OR2M4Q96R27 311 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PKP4Q99569 1192 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 CGREF1Q99674 301 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ROGDIQ9GZN7 287 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 MAGIXQ9H6Y5 334 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 GORASP2Q9H8Y8 452 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 NEUROD4Q9HD90 331 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PRM3Q9NNZ6 103 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TNFRSF12AQ9NP84 129 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PRDM9Q9NQV7 894 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TRNAU1APQ9NX07 287 aaKnown RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 OR6C2Q9NZP2 312 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF282Q9UDV7 671 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 RAB26Q9ULW5 256 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PCDHGB4Q9UN71 923 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ITM2BQ9Y287 266 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 RNF11Q9Y3C5 154 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ZNF451Q9Y4E5 1061 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 POLR3HQ9Y535 204 aaPredicted RBP7.28□□□□□ -1.24
VPS39-204ENST00000561818 AP4S1Q9Y587 144 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 PCDHB3Q9Y5E6 796 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 HS3ST3A1Q9Y663 406 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 MTCH2Q9Y6C9 303 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 ATG2AQ2TAZ0 1938 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 MYO7AQ13402 2215 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3DA0A087WVF3 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3IA0A087WXS9 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3EA0A087X179 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3KA0A087X1G2 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 A0A1W2PQU0 124 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 DHRS12A0PJE2 317 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3FA6NER0 549 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 URADA6NGE7 173 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 ANKDD1BA6NHY2 528 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms