RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NECAB3Q96P71 396 aaPredicted RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 RTKNQ9BST9 563 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 MVB12BQ9H7P6 319 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 GPR27Q9NS67 375 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 SPATA7Q9P0W8 599 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 TAC3Q9UHF0 121 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 CASP2P42575 452 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 EMX2Q04743 252 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 IL23RQ5VWK5 629 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 ADNP2Q6IQ32 1131 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 CYB5D1Q6P9G0 228 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 OR52E1Q8NGJ3 308 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 WDR20Q8TBZ3 569 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 SETD7Q8WTS6 366 aaKnown RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 RAB3IPQ96QF0 476 aaPredicted RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 MTERF1Q99551 399 aaKnown RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 C1orf21Q9H246 121 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 LRTM1Q9HBL6 345 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 GON4LQ3T8J9 2241 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 MUC3AQ02505 3323 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 H0YIV9 168 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 SEC22BO75396 215 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 PSMB5P28074 263 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 ACADVLP49748 655 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 NUDT2P50583 147 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 MEF2AQ02078 507 aaPredicted RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 ILF3Q12906 894 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-209ENST00000561689 WASH2PQ6VEQ5 465 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 RAB42Q8N4Z0 105 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 JPH3Q8WXH2 748 aaPredicted RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 SMPDL3AQ92484 453 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 MCUR1Q96AQ8 359 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 TEX37Q96LM6 180 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 HSPA12BQ96MM6 686 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 NPAS2Q99743 824 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 MIR1-1HGQ9H1L0 117 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 WASH6PQ9NQA3 447 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 POLR3HQ9Y535 204 aaPredicted RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 MAP3K13O43283 966 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 SNRPB2P08579 225 aaKnown RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 C1GALT1C1LP0DN25 315 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 G6PDP11413 515 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 CDH1P12830 882 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 BCKDHBP21953 392 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 RAB28P51157 221 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 SLBPQ14493 270 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-209ENST00000561689 ATG9BQ674R7 924 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 NXPE4Q6UWF7 544 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 LCTLQ6UWM7 567 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 HOMEZQ8IX15 550 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 PHACTR4Q8IZ21 702 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 SPACA7Q96KW9 195 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 HAUS8Q9BT25 410 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 PRM3Q9NNZ6 103 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 GEMIN8Q9NWZ8 242 aaKnown RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 ZNF624Q9P2J8 865 aaPredicted RBP20.54■□□□□ 0.88
CLN3-209ENST00000561689 PCOLCE2Q9UKZ9 415 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 HEBP2Q9Y5Z4 205 aa20.54■□□□□ 0.88
CLN3-209ENST00000561689 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 A0A1W2PPV9 198 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 ZNF839A8K0R7 811 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 WNT1P04628 370 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 CELA2BP08218 269 aaPredicted RBP20.53■□□□□ 0.88
CLN3-209ENST00000561689 PCNAP12004 261 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 ITGAXP20702 1163 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 UFM1P61960 85 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 E2F2Q14209 437 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 USP39Q53GS9 565 aaKnown RBP20.53■□□□□ 0.88
CLN3-209ENST00000561689 TSSK4Q6SA08 328 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 TMEFF1Q8IYR6 380 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 OR7G3Q8NG95 312 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 BRINP2Q9C0B6 783 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 C1orf109Q9NX04 203 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 NOP53Q9NZM5 478 aaKnown RBP20.53■□□□□ 0.88
CLN3-209ENST00000561689 DLGAP2Q9P1A6 1054 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 ICKQ9UPZ9 632 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 PCDHGA11Q9Y5H2 935 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 COLEC10Q9Y6Z7 277 aa20.53■□□□□ 0.88
CLN3-209ENST00000561689 A6NCN8 305 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 NR5A2O00482 541 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 PKLRP30613 574 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 PGM1P36871 562 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 ELF3P78545 371 aaPredicted RBP20.52■□□□□ 0.88
CLN3-209ENST00000561689 MAPRE2Q15555 327 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 DNAL1Q4LDG9 190 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 CWF19L1Q69YN2 538 aaKnown RBP20.52■□□□□ 0.88
CLN3-209ENST00000561689 USP34Q70CQ2 3546 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 WDR34Q96EX3 536 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 THTPAQ9BU02 230 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 PCED1AQ9H1Q7 454 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 SPNS1Q9H2V7 528 aa20.52■□□□□ 0.88
CLN3-209ENST00000561689 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.52■□□□□ 0.88
CLN3-209ENST00000561689 F3P13726 295 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 CD38P28907 300 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 MED27Q6P2C8 311 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 PARGQ86W56 976 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 ZFAND4Q86XD8 727 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 KYQ8NBH2 561 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 HUS1BQ8NHY5 278 aa20.52■□□□□ 0.87
CLN3-209ENST00000561689 GPBAR1Q8TDU6 330 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms