RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CLCA2Q9UQC9 943 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ACTL7BQ9Y614 415 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 A0A0J9YY10 115 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 TLCD2A6NGC4 264 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 DYNC1I1O14576 645 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 HCRTR1O43613 425 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 CCNT2O60583 730 aaKnown RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 SMIM24O75264 130 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 STK16O75716 305 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 CPA3P15088 417 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 MAGP20916 626 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 CDH3P22223 829 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 ATP5F1P24539 256 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 EEF1DP29692 281 aaKnown RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 CCKBRP32239 447 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 GRIA3P42263 894 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 ETV4P43268 484 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 PRDX1Q06830 199 aaKnown RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 TARDBPQ13148 414 aaKnown RBP eCLIP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 KCNAB1Q14722 419 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 FCRL6Q6DN72 434 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 LCTLQ6UWM7 567 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 PRSS42Q7Z5A4 293 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 TCAIMQ8N3R3 496 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 KLHL6Q8WZ60 621 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 SLC22A18Q96BI1 424 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 NSUN5Q96P11 429 aaKnown RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 CD180Q99467 661 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 DPYSL5Q9BPU6 564 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 STMN4Q9H169 189 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-227ENST00000557269 SYNPO2LQ9H987 977 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 FAM60AQ9NP50 221 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 KCNK9Q9NPC2 374 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 C1GALT1Q9NS00 363 aa12.34□□□□□ -0.43
SHMT2-227ENST00000557269 STX16-NPEPL1H3BU86 382 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 E2F3O00716 465 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 STX16O14662 325 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 PRPF4O43172 522 aaKnown RBP eCLIP12.33□□□□□ -0.443e-10■■□□□ 12.6
SHMT2-227ENST00000557269 HYAL3O43820 417 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 IPO13O94829 963 aaKnown RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 ANKRD34CP0C6C1 535 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CDH1P12830 882 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 JUPP14923 745 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TAC1P20366 129 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CCND1P24385 295 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CMPK1P30085 196 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 PRKAA2P54646 552 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 SH3BP2P78314 561 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 NFKB2Q00653 900 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 PCLAFQ15004 111 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 PCBP2Q15366 365 aaKnown RBP eCLIP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 UNC50Q53HI1 259 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CATSPEREQ5SY80 951 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 FAM219BQ5XKK7 198 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 FIGLAQ6QHK4 219 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TMPRSS7Q7RTY8 843 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TMPRSS12Q86WS5 348 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 C10orf107Q8IVU9 208 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 SNX31Q8N9S9 440 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CCDC63Q8NA47 563 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 NEIL2Q969S2 332 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 SLC41A2Q96JW4 573 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TMEM74Q96NL1 305 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TMEM237Q96Q45 408 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 DEPDC7Q96QD5 511 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 DPH7Q9BTV6 452 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 MECRQ9BV79 373 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 IQCGQ9H095 443 aaKnown RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF768Q9H5H4 540 aaKnown RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 CNOT10Q9H9A5 744 aaKnown RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 MLXIPLQ9NP71 852 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 MRPS30Q9NP92 439 aaKnown RBP12.33□□□□□ -0.44
SHMT2-227ENST00000557269 DNAJC11Q9NVH1 559 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 OCIAD1Q9NX40 245 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 COPG2Q9UBF2 871 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 TMCO1Q9UM00 188 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 DCHS1Q96JQ0 3298 aa12.33□□□□□ -0.44
SHMT2-227ENST00000557269 SNRNP200O75643 2136 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 CNOT1A5YKK6 2376 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 TMEM120BA0PK00 339 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 E7EQ34 232 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 H7BY64 318 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 K7EPI3 171 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PPP6CO00743 305 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 TOX3O15405 576 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 CTSVO60911 334 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 CTSBP07858 339 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 RPS17P08708 135 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 MYL2P10916 166 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 CCL4P13236 92 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 HGFP14210 728 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 FOLR1P15328 257 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 NELFEP18615 380 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 TSPAN8P19075 237 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 SPINK2P20155 84 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 VARSP26640 1264 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 ALDH3A1P30838 453 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 MEF2AQ02078 507 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 FOXC1Q12948 553 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 TRA2AQ13595 282 aaKnown RBP eCLIP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms