RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CRTAMO95727 393 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 HEXBP07686 556 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 H2AFZP0C0S5 128 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 CD9P21926 228 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 CDKN2BP42772 138 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 GEMP55040 296 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 PPP2R2AP63151 447 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 SYT16Q17RD7 645 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 SPINK14Q6IE38 97 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 PRMT9Q6P2P2 845 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 SASS6Q6UVJ0 657 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 TMEM205Q6UW68 189 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 CEP128Q6ZU80 1094 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 H2AFVQ71UI9 128 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 DMRTC2Q8IXT2 367 aaPredicted RBP12.25□□□□□ -0.45
VPS29-211ENST00000553128 AMER3Q8N944 861 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 SCMH1Q96GD3 660 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 QKIQ96PU8 341 aaKnown RBP eCLIP12.25□□□□□ -0.451e-6■■■■■ 30.1
VPS29-211ENST00000553128 MDFIQ99750 246 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 SMR3AQ99954 134 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 ZNF559Q9BR84 538 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 GBA3Q9H227 469 aa12.25□□□□□ -0.45
VPS29-211ENST00000553128 FLNAP21333 2647 aaKnown RBP12.25□□□□□ -0.45
VPS29-211ENST00000553128 OR51F1A6NGY5 319 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 SRPX2O60687 465 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 SEC24DO94855 1032 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 TOXO94900 526 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 S1PR4O95977 384 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 GSTM1P09488 218 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 MYBL2P10244 700 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 PSMB4P28070 264 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 RBL1P28749 1068 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 CD96P40200 585 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 HCFC1P51610 2035 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 SNRPNP63162 240 aaKnown RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 GSTM4Q03013 218 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 LTBQ06643 244 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 FASTKQ14296 549 aaKnown RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 SPARCL1Q14515 664 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 OR1C1Q15619 314 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 CEBPEQ15744 281 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 TAZQ16635 292 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 SYTL3Q4VX76 610 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 FIGNQ5HY92 759 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 ACER2Q5QJU3 275 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 CHDHQ8NE62 594 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 OR2L8Q8NGY9 312 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 CFAP61Q8NHU2 1237 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 CTNNBL1Q8WYA6 563 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 SYN2Q92777 582 aaPredicted RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 VAT1Q99536 393 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 MIPEPQ99797 713 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 LMBRD1Q9NUN5 540 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 INTS7Q9NVH2 962 aaKnown RBP12.24□□□□□ -0.45
VPS29-211ENST00000553128 COQ3Q9NZJ6 369 aa12.24□□□□□ -0.45
VPS29-211ENST00000553128 RCCD1A6NED2 376 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 OR1I1O60431 355 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 ANXA9O76027 345 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 TSPAN12O95859 305 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 MSX1P28360 303 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 EEF1DP29692 281 aaKnown RBP12.23□□□□□ -0.45
VPS29-211ENST00000553128 PTGER1P34995 402 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 TYRO3Q06418 890 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 DSG2Q14126 1118 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 NR1I3Q14994 352 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 MUM1Q2TAK8 710 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 PRTGQ2VWP7 1150 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 CCSMST1Q4G0I0 132 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 FILIP1LQ4L180 1135 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 LANCL3Q6ZV70 420 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 RNF44Q7L0R7 432 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 BZW1Q7L1Q6 419 aaKnown RBP12.23□□□□□ -0.45
VPS29-211ENST00000553128 GALNTL5Q7Z4T8 443 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 CRLF3Q8IUI8 442 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 ZC3H7AQ8IWR0 971 aaKnown RBP12.23□□□□□ -0.45
VPS29-211ENST00000553128 GHDCQ8N2G8 530 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 RPRMLQ8N4K4 120 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 SLC35G2Q8TBE7 412 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 LKAAEAR1Q8TD35 194 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 P3H4Q92791 437 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 ZUFSPQ96AP4 578 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 SLC22A18Q96BI1 424 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 TUBB6Q9BUF5 446 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 TEKT2Q9UIF3 430 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 TRHDEQ9UKU6 1024 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 RNF6Q9Y252 685 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 AKAP6Q13023 2319 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 ABCA4P78363 2273 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 GTF3C1Q12789 2109 aa12.23□□□□□ -0.45
VPS29-211ENST00000553128 INTS1Q8N201 2190 aaKnown RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 HRNRQ86YZ3 2850 aaPredicted RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 OR2W5A6NFC9 320 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TARM1B6A8C7 271 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 H7C0S8 307 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 PRRG2O14669 202 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 RASGRF2O14827 1237 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 FTH1P02794 183 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TPH1P17752 444 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 CCR7P32248 378 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms