RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CTSVO60911 334 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 IPO13O94829 963 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 C1orf105O95561 183 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 DDAH2O95865 285 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ALBP02768 609 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 RPN2P04844 631 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ALPPP05187 535 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ITGA3P26006 1051 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 COL8A1P27658 744 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 PSMB5P28074 263 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 NMBRP28336 390 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 BDKRB1P46663 353 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 TTPAP49638 278 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 VSX2P58304 361 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 YBX1P67809 324 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 AIMP2Q13155 320 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 GRM7Q14831 915 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 TMED2Q15363 201 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ZC3H12BQ5HYM0 836 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 AARS2Q5JTZ9 985 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 WASHC2DQ5SRD0 308 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 PTRHD1Q6GMV3 140 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 KIRREL2Q6UWL6 708 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 CES3Q6UWW8 571 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 SHISA6Q6ZSJ9 500 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 TXLNBQ8N3L3 684 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 RNF10Q8N5U6 811 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 METTL27Q8N6F8 245 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 CCDC89Q8N998 374 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 SPC24Q8NBT2 197 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 DENND1AQ8TEH3 1009 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ZUFSPQ96AP4 578 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 FKBP10Q96AY3 582 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 RAD51AP1Q96B01 352 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 BARD1Q99728 777 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 SELENOSQ9BQE4 189 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 MESP1Q9BRJ9 268 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 GRIP2Q9C0E4 1043 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 ILKAPQ9H0C8 392 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 SLC26A1Q9H2B4 701 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 SOX17Q9H6I2 414 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 ENAMQ9NRM1 1142 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 TREX1Q9NSU2 369 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 INTS7Q9NVH2 962 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 PLA2G2EQ9NZK7 142 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 STOX2Q9P2F5 926 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 CDC23Q9UJX2 597 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 TTC7AQ9ULT0 858 aaPredicted RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 GUCA1BQ9UMX6 200 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 RUVBL2Q9Y230 463 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 HS3ST3B1Q9Y662 390 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 COPG1Q9Y678 874 aaKnown RBP8.1□□□□□ -1.11
USP28-215ENST00000545608 MAU2Q9Y6X3 613 aa8.1□□□□□ -1.11
USP28-215ENST00000545608 NOTCH2Q04721 2471 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 CCDC88CQ9P219 2028 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 LOC105369274A0A096LPK9 316 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 LOC102723532A0A0G2JNH3 316 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 A0A0J9YVX5 310 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 A0A1W2PPV9 198 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 FITM1A5D6W6 292 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 ANKUB1A6NFN9 424 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 VSTM2BA6NLU5 285 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 TARM1B6A8C7 271 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 SRPX2O60687 465 aaPredicted RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 NDUFS3O75489 264 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 CLDN1O95832 211 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 LDLRP01130 860 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 RPLP1P05386 114 aaKnown RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 PIM1P11309 404 aaPredicted RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 RPS3P23396 243 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP28-215ENST00000545608 MGAT1P26572 445 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 ARNTP27540 789 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 NPY2RP49146 381 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 RNF144AP50876 292 aaPredicted RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 EIF3BP55884 814 aaKnown RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 FASTKQ14296 549 aaKnown RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 CCNG2Q16589 344 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 TCTE1Q5JU00 501 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 CTSL3PQ5NE16 218 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 YOD1Q5VVQ6 348 aaPredicted RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 PRAMEF13Q5VWM6 474 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 FRMPD2BQ6IN97 320 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 FBXO42Q6P3S6 717 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 TTC23LQ6PF05 361 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 IGFL2Q6UWQ7 119 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 OR4N4Q8N0Y3 316 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 TTC29Q8NA56 475 aaPredicted RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 OR2L3Q8NG85 312 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 OR2A1Q8NGT9 310 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 HMGCLL1Q8TB92 370 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 TM9SF4Q92544 642 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 NACC2Q96BF6 587 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 ALKBH8Q96BT7 664 aaKnown RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 MFSD3Q96ES6 412 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 PANX3Q96QZ0 392 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 MIPEPQ99797 713 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 WDR54Q9H977 334 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 GALPQ9UBC7 116 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 CTSFQ9UBX1 484 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 ZC3H7BQ9UGR2 993 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms